RISS 학술연구정보서비스

검색
다국어 입력

http://chineseinput.net/에서 pinyin(병음)방식으로 중국어를 변환할 수 있습니다.

변환된 중국어를 복사하여 사용하시면 됩니다.

예시)
  • 中文 을 입력하시려면 zhongwen을 입력하시고 space를누르시면됩니다.
  • 北京 을 입력하시려면 beijing을 입력하시고 space를 누르시면 됩니다.
닫기
    인기검색어 순위 펼치기

    RISS 인기검색어

      KCI등재 SCIE SCOPUS

      Mucilaginibacter aquariorum sp. nov., Isolated from Fresh Water

      한글로보기

      https://www.riss.kr/link?id=A108394179

      • 0

        상세조회
      • 0

        다운로드
      서지정보 열기
      • 내보내기
      • 내책장담기
      • 공유하기
      • 오류접수

      부가정보

      다국어 초록 (Multilingual Abstract)

      A Gram-stain-negative, rod-shaped bacterial strain, JC4T , was isolated from a freshwater sample and determined the taxonomic position. Initial identification based on 16S rRNA gene sequences revealed that strain JC4T is affiliated to the genus Mucila...

      A Gram-stain-negative, rod-shaped bacterial strain, JC4T , was isolated from a freshwater sample and determined the taxonomic position. Initial identification based on 16S rRNA gene sequences revealed that strain JC4T is affiliated to the genus Mucilaginibacter with a sequence similarity of 97.97% to Mucilaginibacter rigui WPCB133T . The average nucleotide identity and digital DNA–DNA hybridization values between strain JC4T and Mucilaginibacter species were estimated below 80.92% and 23.9%, respectively. Strain JC4T contained summed feature 3 (C16:1 ω7c and/or C16:1 ω6c) and iso-C15:0 as predominant cellular fatty acids. The dominant polar lipids were identified as phosphatidylethanolamine, one unidentified aminophospholipid, one unidentified phospholipid, and two unidentified lipids. The respiratory quinone was MK-7. The genomic DNA G+C content of strain JC4T was determined to be 42.44%. The above polyphasic evidences support that strain JC4T represents a novel species of the genus Mucilaginibacter, for which the name Mucilaginibacter aquariorum sp. nov. is proposed. The type strain is JC4T (= KCTC 92230T = LMG 32715T ).

      더보기

      참고문헌 (Reference) 논문관계도

      1 Cantalapiedra CP, "eggNOG-mapper v2 : functional annotation, orthology assignments, and domain prediction at the metagenomic scale" 38 : 5825-5829, 2021

      2 Bolger AM, "Trimmomatic : a flexible trimmer for Illumina sequence data" 30 : 2114-2120, 2014

      3 Kim M, "Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes" 64 : 346-351, 2014

      4 Oren A, "The polar lipid composition of Walsby’s square bacterium" 138 : 135-140, 1996

      5 Nei M, "The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small" 95 : 12390-12397, 1998

      6 Saitou N, "The neighbor-joining method : a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      7 Davis JJ, "The PATRIC bioinformatics resource center : expanding data and analysis capabilities" 48 : 606-612, 2020

      8 Kimura M, "The Neutral Theory of Molecular Evolution" Cambridge University Press 1983

      9 Yamada Y, "Terpene synthases are widely distributed in bacteria" 112 : 857-862, 2015

      10 Oldfield E, "Terpene biosynthesis : modularity rules" 51 : 1124-1137, 2012

      1 Cantalapiedra CP, "eggNOG-mapper v2 : functional annotation, orthology assignments, and domain prediction at the metagenomic scale" 38 : 5825-5829, 2021

      2 Bolger AM, "Trimmomatic : a flexible trimmer for Illumina sequence data" 30 : 2114-2120, 2014

      3 Kim M, "Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes" 64 : 346-351, 2014

      4 Oren A, "The polar lipid composition of Walsby’s square bacterium" 138 : 135-140, 1996

      5 Nei M, "The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small" 95 : 12390-12397, 1998

      6 Saitou N, "The neighbor-joining method : a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      7 Davis JJ, "The PATRIC bioinformatics resource center : expanding data and analysis capabilities" 48 : 606-612, 2020

      8 Kimura M, "The Neutral Theory of Molecular Evolution" Cambridge University Press 1983

      9 Yamada Y, "Terpene synthases are widely distributed in bacteria" 112 : 857-862, 2015

      10 Oldfield E, "Terpene biosynthesis : modularity rules" 51 : 1124-1137, 2012

      11 Kates M, "Techniques of Lipidology : Isolation, Analysis and Identification of Lipids" North-Holland Pub. Co 1972

      12 Meier-KolthoffJP, "TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy" 10 : 2182-, 2019

      13 Richter M, "Shifting the genomic gold standard for the prokaryotic species definition" 106 : 19126-19131, 2009

      14 Osbourn A, "Secondary metabolic gene clusters : evolutionary toolkits for chemical innovation" 26 : 449-457, 2010

      15 Chun J, "Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes" 68 : 461-466, 2018

      16 Le VV, "Panacibacter microcysteis sp. nov., isolated from a eutrophic reservoir during the Microcystis bloom period" 204 : 291-, 2022

      17 Zhao Y, "PGAP : pan-genomes analysis pipeline" 28 : 416-418, 2012

      18 Agrawal S, "Nonribosomal peptides from marine microbes and their antimicrobial and anticancer potential" 8 : 828-, 2017

      19 Ay H, "Nonomuraea terrae sp. nov., isolated from arid soil. Arch" 202 : 2197-2205, 2020

      20 Nouioui I, "Nocardia noduli sp. nov., a novel actinobacterium with biotechnological potential. Arch" 204 : 260-, 2022

      21 Ten LN, "Mucilaginibacter terrigena sp. nov., a novel member of the family Sphingobacteriaceae" 76 : 1152-1160, 2019

      22 Smith DL, "Mucilaginibacter sp. K improves growth and induces salt tolerance in nonhost plants via multilevel mechanisms" 13 : 938697-, 2022

      23 Baik KS, "Mucilaginibacter rigui sp. nov., isolated from wetland freshwater, and emended description of the genus Mucilaginibacter" 60 : 134-139, 2010

      24 Pankratov TA, "Mucilaginibacter paludis gen. nov., sp. nov. and Mucilaginibacter gracilis sp. nov., pectin-, xylan- and laminarin-degrading members of the family Sphingobacteriaceae from acidic Sphagnum peat bog" 57 : 2349-2354, 2007

      25 Kim JH, "Mucilaginibacter lutimaris sp. nov., isolated from a tidal flat sediment" 62 : 515-519, 2012

      26 Yoon JH, "Mucilaginibacter litoreus sp. nov., isolated from marine sand" 62 : 2822-2827, 2012

      27 Sang-Ah Lee, "Mucilaginibacter inviolabilis sp. nov., isolated from the phycosphere of Haematococcus lacustris NIES 144 culture" Microbiology Society 71 (71): 2019

      28 Choi L, "Mucilaginibacter hurinus sp. nov., isolated from briquette warehouse soil" 202 : 127-134, 2020

      29 Kang H, "Mucilaginibacter aquatilis sp. nov., Mucilaginibacter arboris sp. nov., and Mucilaginibacter ginkgonis sp. nov., novel bacteria isolated from freshwater and tree bark" 71 : 004755-, 2021

      30 Tindall BJ, "Methods for General and Molecular Bacteriology" American Society for Microbiology 330-393, 2007

      31 Smibert RM, "Methods for General and Molecular Bacteriology" American Society for Microbiology 607-654, 1994

      32 Ko SR, "Mariniflexile maritimum sp. nov., isolated from seawater of the South Sea in the Republic of Korea" 71 : 004925-, 2021

      33 Kumar S, "MEGA X : molecular evolutionary genetics analysis across computing platforms" 35 : 1547-1549, 2018

      34 Sasser M, "Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101" 1990

      35 Le VV, "Hymenobacter cyanobacteriorum sp. nov., isolated from a freshwater reservoir during the cyanobacterial bloom period" 204 : 369-, 2022

      36 Fan X, "High-quality-draft genome sequence of the heavy metal resistant and exopolysaccharides producing bacterium Mucilaginibacter pedocola TBZ30T 06" 13 : 34-, 2018

      37 Meier-KolthoffJP, "Genome sequence-based species delimitation with confidence intervals and improved distance functions" 14 : 60-, 2013

      38 Li YP, "Extrapolymeric substances(EPS)in Mucilaginibacter rubeus P2displayed efficient metal(loid)bio-adsorption and production was induced by copper and zinc" 291 : 132712-, 2022

      39 Felsenstein J, "Evolutionary trees from DNA sequences : a maximum likelihood approach" 17 : 368-376, 1981

      40 Lin L, "Effects of water pollution on human health and disease heterogeneity : a review" 10 : 880246-, 2022

      41 Auch AF, "Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison" 2 : 117-134, 2010

      42 Keto-Timonen R, "Cold shock proteins : a minireview with special emphasis on Csp-family of enteropathogenic Yersinia" 7 : 1151-, 2016

      43 Le VV, "Cochlodiniinecator piscidefendens gen. nov., sp. nov., an algicidal bacterium against the ichthyotoxic dinoflagellate Cochlodinium polykrikoides" 71 : 005124-, 2021

      44 Barbosa J, "Class I and class II lanthipeptides produced by Bacillus spp" 78 : 2850-2866, 2015

      45 Le Ve Van ; Ko So-Ra ; Lee Sang-Ah ; Kang Mingyeong ; 오희목 ; 안치용, "Caenimonas aquaedulcis sp. nov., Isolated from Freshwater of Daechung Reservoir during Microcystis Bloom" 한국미생물·생명공학회 32 (32): 575-581, 2022

      46 Simão FA, "BUSCO : assessing genome assembly and annotation completeness with single-copy orthologs" 31 : 3210-3212, 2015

      47 Bauer AW, "Antibiotic susceptibility testing by a standardized single disk method" 45 : 493-496, 1966

      48 Blin K, "AntiSMASH 5.0: updates to the secondary metabolite genome mining pipeline" 47 : 81-87, 2019

      49 Tamaoka J, "Analysis of bacterial menaquinone mixtures by reverse-phase high-performance liquid chromatography" 123 : 251-256, 1986

      50 Minnikin DE, "An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids" 2 : 233-241, 1984

      51 Yin H, "An integrated insight into the response of sedimentary microbial communities to heavy metal contamination" 5 : 14266-, 2015

      52 Wang ZY, "An assessment of the genomics, comparative genomics and cellulose degradation potential of Mucilaginibacter polytrichastri strain RG4-7" 297 : 122389-, 2020

      53 Yoon SH, "A large-scale evaluation of algorithms to calculate average nucleotide identity" 110 : 1281-1286, 2017

      54 Weisburg WG, "16S ribosomal DNA amplification for phylogenetic study" 173 : 697-703, 1991

      더보기

      동일학술지(권/호) 다른 논문

      분석정보

      View

      상세정보조회

      0

      Usage

      원문다운로드

      0

      대출신청

      0

      복사신청

      0

      EDDS신청

      0

      동일 주제 내 활용도 TOP

      더보기

      주제

      연도별 연구동향

      연도별 활용동향

      연관논문

      연구자 네트워크맵

      공동연구자 (7)

      유사연구자 (20) 활용도상위20명

      이 자료와 함께 이용한 RISS 자료

      나만을 위한 추천자료

      해외이동버튼