1 Rodrigues R, "Young pregnant women living with HIV/AIDS in Criciuma, Southern Brazil, are infected almost exclusively with HIV type 1 clade C" 26 : 351-357, 2010
2 Bar KJ, "Wide variation in the multiplicity of HIV-1 infection among injection drug users" 84 : 6241-6247, 2010
3 Wei X, "Viral dynamics in human immunodeficiency virus type 1 infection" 373 : 117-122, 1995
4 Little SJ, "Using HIV networks to inform real time prevention interventions" 9 : e98443-, 2014
5 Vidal N, "Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa" 74 : 10498-10507, 2000
6 Rodenburg CM, "UNAIDS and NIAID Networks for HIV Isolation and Characterization. Near full-length clones and reference sequences for subtype C isolates of HIV type 1 from three different continents" 17 : 161-168, 2001
7 Leigh Brown AJ, "UK HIV Drug Resistance Collaboration. Transmission network parameters estimated from HIV sequences for a nationwide epidemic" 204 : 1463-1469, 2011
8 Robbins KE, "U.S. human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains" 77 : 6359-6366, 2003
9 Tebit DM, "Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease" 11 : 45-56, 2011
10 Lemey P, "Tracing the origin and history of the HIV-2 epidemic" 100 : 6588-6592, 2003
1 Rodrigues R, "Young pregnant women living with HIV/AIDS in Criciuma, Southern Brazil, are infected almost exclusively with HIV type 1 clade C" 26 : 351-357, 2010
2 Bar KJ, "Wide variation in the multiplicity of HIV-1 infection among injection drug users" 84 : 6241-6247, 2010
3 Wei X, "Viral dynamics in human immunodeficiency virus type 1 infection" 373 : 117-122, 1995
4 Little SJ, "Using HIV networks to inform real time prevention interventions" 9 : e98443-, 2014
5 Vidal N, "Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa" 74 : 10498-10507, 2000
6 Rodenburg CM, "UNAIDS and NIAID Networks for HIV Isolation and Characterization. Near full-length clones and reference sequences for subtype C isolates of HIV type 1 from three different continents" 17 : 161-168, 2001
7 Leigh Brown AJ, "UK HIV Drug Resistance Collaboration. Transmission network parameters estimated from HIV sequences for a nationwide epidemic" 204 : 1463-1469, 2011
8 Robbins KE, "U.S. human immunodeficiency virus type 1 epidemic: date of origin, population history, and characterization of early strains" 77 : 6359-6366, 2003
9 Tebit DM, "Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease" 11 : 45-56, 2011
10 Lemey P, "Tracing the origin and history of the HIV-2 epidemic" 100 : 6588-6592, 2003
11 Hemelaar J., "The origin and diversity of the HIV-1 pandemic" 18 : 182-192, 2012
12 Wertheim JO, "The global transmission network of HIV-1" 209 : 304-313, 2014
13 Deng X, "The epidemic origin and molecular properties of B': a founder strain of the HIV-1 transmission in Asia" 22 : 1851-1858, 2008
14 Roberts J, "The accuracy of reverse transcriptase from HIV-1" 242 : 1171-1173, 1988
15 Krushkal J, "The Evolution of HIV" The Johns Hopkins University Press 1999
16 Wang X, "Targeting HIV prevention based on molecular epidemiology among deeply sampled subnetworks of men who have sex with men" 61 : 1462-1468, 2015
17 Pérez-Alvarez L, "Spanish Group for Antiretroviral Resistance Studies in Galicia. Isolation and biological characterization of HIV-1 BG intersubtype recombinants and other genetic forms circulating in Galicia, Spain" 78 : 1520-1528, 2006
18 Chin BS, "Short communication: increase of HIV-1 K103N transmitted drug resistance and its association with efavirenz use in South Korea" 31 : 603-607, 2015
19 Temin HM, "Retrovirus variation and reverse transcription: abnormal strand transfers result in retrovirus genetic variation" 90 : 6900-6903, 1993
20 Burke DS, "Recombination in HIV: an important viral evolutionary strategy" 3 : 253-259, 1997
21 Robertson DL, "Recombination in AIDS viruses" 40 : 249-259, 1995
22 Ho DD, "Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection" 373 : 123-126, 1995
23 Felsenstein J., "Phylogenies from molecular sequences: inference and reliability" 22 : 521-565, 1988
24 Kang MR, "Phylogenetic analysis of the nef gene reveals a distinctive monophyletic clade in Korean HIV-1 cases" 17 : 58-68, 1998
25 Cho YK, "Phylogenetic analysis of the earliest nef gene from hemophiliacs and local controls in Korea" 1 : 41-49, 2012
26 Sung H, "Phylogenetic analysis of reverse transcriptase in antiretroviral drug-naive Korean HIV type 1 patients" 17 : 1549-1554, 2001
27 Cho YK, "Phylogenetic analysis of fulllength pol gene from Korean hemophiliacs and plasma donors infected with Korean subclade B of HIV type 1" 27 : 613-621, 2011
28 Gao F, "Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes" 397 : 436-441, 1999
29 Sung H, "Natural polymorphisms of protease in protease inhibitor-naive HIV-1 infected patients in Korea: a novel L63M in subtype B" 19 : 525-530, 2003
30 Kim GJ, "National survey of prevalent HIV strains: limited genetic variation of Korean HIV-1 clade B within the population of Korean men who have sex with men" 48 : 127-132, 2008
31 Choi JY, "National survey for drug-resistant variants in newly diagnosed antiretroviral drug-naive patients with HIV/AIDS in South Korea: 1999-2005" 49 : 237-242, 2008
32 Kim YB, "Molecular phylogenetic analysis of human immunodeficiency virus type 1 strains obtained from Korean patients: env gene sequences" 15 : 303-307, 1999
33 Chin BS, "Molecular epidemiology identifies HIV transmission networks associated with younger age and heterosexual exposure among Korean individuals" 88 : 1832-1835, 2016
34 Chan Seung Park, "Molecular Phylogenetic Analysis of HIV-1 vif Gene from Korean Isolates" 한국미생물학회 44 (44): 655-659, 2006
35 Preston BD, "Mechanisms of retroviral mutation" 4 : 16-21, 1996
36 Hattori J, "Japanese Drug Resistance HIV-1 Surveillance Network. Characteristics of transmitted drug-resistant HIV-1 in recently infected treatment- naive patients in Japan" 71 : 367-373, 2016
37 Haaland RE, "Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexualtransmission of subtype A and C HIV-1" 5 : e1000274-, 2009
38 Grobler J, "Incidence of HIV-1 dual infection and its association with increased viral load set point in a cohort of HIV-1 subtype C-infected female sex workers" 190 : 1355-1359, 2004
39 Simon F, "Identification of a new human immunodeficiency virus type 1 distinct from group M and group O" 4 : 1032-1037, 1998
40 Rambaut A, "Human immunodeficiency virus: Phylogeny and the origin of HIV-1" 410 : 1047-1048, 2001
41 Li H, "High multiplicity infection by HIV-1 in men who have sex with men" 6 : e1000890-, 2010
42 Powell RL, "High frequency of HIV-1 dual infections among HIV-positive individuals in Cameroon, West Central Africa" 50 : 84-92, 2009
43 Triques K, "High diversity of HIV-1 subtype F strains in Central Africa" 259 : 99-109, 1999
44 Soares EA, "HIV-1 subtype C dissemination in southern Brazil" 19 (19): S81-S86, 2005
45 Robertson DL, "HIV-1 nomenclature proposal" 288 : 55-56, 2000
46 Pillay D, "HIV phylogenetics" 335 : 460-461, 2007
47 Los Alamos National Laboratory, "HIV circulating recombinant forms (CRFs)"
48 Ghys PD, "Growing in silence: selected regions and countries with expanding HIV/ AIDS epidemics" 17 (17): S45-S50, 2003
49 Hemelaar J, "Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004" 20 : W13-W23, 2006
50 UNAIDS, "Global AIDS update 2016"
51 de Silva UC, "Genotypic characterization of HIV type 1 env gp160 sequences from three regions in Thailand" 26 : 223-227, 2010
52 Hu WS, "Genetic consequences of packaging two RNA genomes in one retroviral particle: pseudodiploidy and high rate of genetic recombination" 87 : 1556-1560, 1990
53 Preston B, "Fidelity of HIV-1 reverse transcriptase" 242 : 1168-1171, 1988
54 Aghokeng AF, "Extensive survey on the prevalence and genetic diversity of SIVs in primate bushmeat provide insights into risks for potential new cross-species transmissions" 10 : 386-396, 2010
55 Rousseau CM, "Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections" 81 : 4492-4500, 2007
56 Korber B, "Evolutionary and immunological implications of contemporary HIV-1 variation" 58 : 19-42, 2001
57 Kim GJ, "Estimating the origin and evolution characteristics for Korean HIV type 1 subtype B using Bayesian phylogenetic analysis" 28 : 880-884, 2012
58 Lewis F, "Episodic sexual transmission of HIV revealed by molecular phylodynamics" 5 : e50-, 2008
59 Gottlieb GS, "Dual HIV-1 infection associated with rapid disease progression" 363 : 619-622, 2004
60 Los Alamos National Laboratory, "Distribution of all HIV-1 sequences: world"
61 Worobey M, "Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960" 455 : 661-664, 2008
62 Bello G, "Demographic history of HIV-1 subtypes B and F in Brazil" 7 : 263-270, 2007
63 Wertheim JO, "Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2" 5 : e1000377-, 2009
64 Felsenstein J, "Confidence limits on phylogenies: an approach using the bootstrap" 39 : 783-791, 1985
65 Posada D, "Computational Analysis of HIV Molecular Sequences" Kluwer Academic Publishers 121-160, 2011
66 Chin BS, "Comparison of genotypic resistance mutations in treatment-naive HIV type 1-infected patients in Korea and China" 26 : 217-221, 2010
67 Keele BF, "Chimpanzee reservoirs of pandemic and nonpandemic HIV-1" 313 : 523-526, 2006
68 Peeters M, "Characterization of a highly replicative intergroup M/O human immunodeficiency virus Type 1 recombinant isolated from a Cameroonian patient" 73 : 7368-7375, 1999
69 Korea Centers for Disease Control and Prevention, "Annual report on the notified HIV/AIDS in Korea"
70 Efron B, "An Introduction to the bootstrap" Chapman & Hall 1993
71 Daniels RS, "An HIV type 1 subtype B founder effect in Korea: gp160 signature patterns infer circulation of CTL-escape strains at the population level" 19 : 631-641, 2003
72 Zhu T, "An African HIV-1 sequence from 1959 and implications for the origin of the epidemic" 391 : 594-597, 1998
73 UNAIDS, "AIDSinfo HIV Prevalence"
74 Piyasirisilp S, "A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant" 74 : 11286-11295, 2000