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      차세대염기서열방법을 이용한 경북 봉화군 장군봉 소나무림의 토양 박테리아 군집 구성 = Soil Bacterial Community in Red Pine Forest of Mt. Janggunbong, Bonghwa-Gun, Gyeongbuk, Korea, Using Next Generation Sequencing

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      https://www.riss.kr/link?id=A103238076

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      다국어 초록 (Multilingual Abstract)

      The soil microbiome plays important roles in material cycling and plant growth in forest ecosystem. Although a lot of researches on forest soil fungi in Korea have been performed, the studies on forest soil bacterial communities have been limited. In this study, we conducted next generation sequencing (NGS) targeting 16S rRNA gene to investigate the soil bacterial communities from natural red pine (Pinus densiflora) forest in Mt. Janggunbong, Bonghwa-gun, Gyeongbuk, Korea. Our results showed that the entire bacterial communities in the study sites include the phyla Proteobacteria, Acidobacteria, Actinobacteria, Planctomycetes, which have been typically observed in forest soils. The composition ratio of Proteobacteria was the highest in the soil bacteria community. The results reflect that Proteobacteria is copiotroph, which generally favors relatively nutrient-rich conditions with abundant organic matter. Some rhizobia species such as Burkholderia, Bradyrhizobium, Rhizobium, which are known to contribute to soil nitrogen-fixation, exist in the study sites. As a result of correlation analysis between soil physicochemical characteristics and bacteria communities, the soil pH was significantly correlated with the soil bacteria compositions.
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      The soil microbiome plays important roles in material cycling and plant growth in forest ecosystem. Although a lot of researches on forest soil fungi in Korea have been performed, the studies on forest soil bacterial communities have been limited. In ...

      The soil microbiome plays important roles in material cycling and plant growth in forest ecosystem. Although a lot of researches on forest soil fungi in Korea have been performed, the studies on forest soil bacterial communities have been limited. In this study, we conducted next generation sequencing (NGS) targeting 16S rRNA gene to investigate the soil bacterial communities from natural red pine (Pinus densiflora) forest in Mt. Janggunbong, Bonghwa-gun, Gyeongbuk, Korea. Our results showed that the entire bacterial communities in the study sites include the phyla Proteobacteria, Acidobacteria, Actinobacteria, Planctomycetes, which have been typically observed in forest soils. The composition ratio of Proteobacteria was the highest in the soil bacteria community. The results reflect that Proteobacteria is copiotroph, which generally favors relatively nutrient-rich conditions with abundant organic matter. Some rhizobia species such as Burkholderia, Bradyrhizobium, Rhizobium, which are known to contribute to soil nitrogen-fixation, exist in the study sites. As a result of correlation analysis between soil physicochemical characteristics and bacteria communities, the soil pH was significantly correlated with the soil bacteria compositions.

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      참고문헌 (Reference)

      1 박남창, "토양의 물리화학적 성질에 의한 소나무림 임지생산력 추정" 한국토양비료학회 42 (42): 160-166, 2009

      2 이중효, "불영사계곡 일대 소나무림의 군락유형과 개체군동태" 한국산림과학회 93 (93): 59-66, 2004

      3 변성엽, "봉화군 장군봉 일대 천연림과 인공조림지내 현존식생의 임분구조" 한국환경생태학회 30 (30): 1032-1046, 2016

      4 박출영, "경상북도 산림지역의 토양 환경이 호기성 토양 세균의 다양성과 밀도에 미치는 영향" 한국산림과학회 101 (101): 501-508, 2012

      5 Chapman, S. K., "What type of diversity yields synergy during mixed litter decomposition in a natural forest ecosystem?" 299 : 153-162, 2007

      6 Fierer, N., "Toward an ecological classification of soil bacteria" 88 (88): 1354-1364, 2007

      7 Bloomfield, S. F., "The viable but non-culturable phenomenon explained?" 144 (144): 1-3, 1998

      8 Van Der Heijden, M. G., "The unseen majority : Soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems" 11 (11): 296-310, 2008

      9 Berendsen, R. L., "The rhizosphere microbiome and plant health" 17 (17): 478-486, 2012

      10 Fierer, N., "The diversity and biogeography of soil bacterial communities" 103 (103): 626-631, 2006

      1 박남창, "토양의 물리화학적 성질에 의한 소나무림 임지생산력 추정" 한국토양비료학회 42 (42): 160-166, 2009

      2 이중효, "불영사계곡 일대 소나무림의 군락유형과 개체군동태" 한국산림과학회 93 (93): 59-66, 2004

      3 변성엽, "봉화군 장군봉 일대 천연림과 인공조림지내 현존식생의 임분구조" 한국환경생태학회 30 (30): 1032-1046, 2016

      4 박출영, "경상북도 산림지역의 토양 환경이 호기성 토양 세균의 다양성과 밀도에 미치는 영향" 한국산림과학회 101 (101): 501-508, 2012

      5 Chapman, S. K., "What type of diversity yields synergy during mixed litter decomposition in a natural forest ecosystem?" 299 : 153-162, 2007

      6 Fierer, N., "Toward an ecological classification of soil bacteria" 88 (88): 1354-1364, 2007

      7 Bloomfield, S. F., "The viable but non-culturable phenomenon explained?" 144 (144): 1-3, 1998

      8 Van Der Heijden, M. G., "The unseen majority : Soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems" 11 (11): 296-310, 2008

      9 Berendsen, R. L., "The rhizosphere microbiome and plant health" 17 (17): 478-486, 2012

      10 Fierer, N., "The diversity and biogeography of soil bacterial communities" 103 (103): 626-631, 2006

      11 Chun, J., "The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer" 10 : 101-, 2010

      12 Korea Forestry Service(KFS), "Statistical yearbook of forestry" Korea Forest Service 418-, 2016

      13 Ste-Marie, C., "Soil, pH and N availability effects on net nitrification in the forest floors of a range of boreal forest stands" 31 (31): 1579-1589, 1999

      14 Korea Forest Research Institute, "Soil tests and plant analysis" Korea Forest Research Institute 2014

      15 Prasanna, S. N, "Soil pH and its role in cyanobacterial abundance and diversity in rice field soils" 5 (5): 103-113, 2007

      16 Banning, N. C., "Soil microbial community successional patterns during forest ecosystem restoration" 77 (77): 6158-6164, 2011

      17 Bowles, T. M., "Soil enzyme activities, microbial communities, and carbon and nitrogen availability in organic agroecosystems across an intensively-managed agricultural landscape" 68 : 252-262, 2014

      18 Li, H., "Soil bacterial communities of different natural forest types in Northeast China" 383 : 203-216, 2014

      19 Hartmann, M., "Significant and persistent impact of timber harvesting on soil microbial communities in northern coniferous forests" 6 (6): 2199-2218, 2012

      20 Panke-Buisse, K., "Selection on soil microbiomes reveals reproducible impacts on plant function" 9 (9): 980-989, 2015

      21 Hartmann, M., "Resistance and resilience of the forest soil microbiome to logging-associated compaction" 8 (8): 226-244, 2014

      22 Shamseldin, A., "Recent changes to the classification of symbiotic, nitrogen-fixing, legume-associating bacteria : A review" 71 (71): 91-109, 2016

      23 Lauber, C. L., "Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale" 75 (75): 5111-5120, 2009

      24 Uroz, S., "Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil" 2 (2): 281-288, 2010

      25 Palleroni, N. J, "Prokaryotic diversity and the importance of culturing" 72 (72): 3-19, 1997

      26 Lareen, A., "Plant root-microbe communication in shaping root microbiomes" 90 (90): 575-587, 2016

      27 El Zahar Haichar, F., "Plant host habitat and root exudates shape soil bacterial community structure" 2 (2): 1221-1230, 2008

      28 Tanaka, M., "Phylogenetic diversity of non-nodulating Rhizobium associated with pine ectomycorrhizae" 69 (69): 329-343, 2009

      29 Kamilova, F., "Organic acids, sugars, and l-tryptophane in exudates of vegetables growing on stonewool and their effects on activities of rhizosphere bacteria" 19 (19): 250-256, 2006

      30 Sprent, J. I, "Nodulation in legumes" John Wiley and Sons 200-, 2001

      31 Kumar, S., "MEGA7 : Molecular evolutionary genetics analysis version 7. 0 for bigger datasets" 33 (33): 1870-1874, 2016

      32 Kim, O., "Introducing EzTaxon-e : A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species" 62 (62): 716-721, 2012

      33 Blagodatskaya, E. V., "Interactive effects of pH and substrate quality on the fungal-to-bacterial ratio and qCO2 of microbial communities in forest soils" 30 (30): 1269-1274, 1998

      34 Micallef, S. A., "Influence of Arabidopsis thaliana accessions on rhizobacterial communities and natural variation in root exudates" 60 (60): 1729-1742, 2009

      35 Lee-Cruz, L., "Impact of logging and forest conversion to oil palm plantations on soil bacterial communities in Borneo" 79 (79): 7290-7297, 2013

      36 Kim, B., "Impact of enrofloxacin on the human intestinal microbiota revealed by comparative molecular analysis" 18 (18): 310-320, 2012

      37 Janssen, P. H, "Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes" 72 (72): 1719-1728, 2006

      38 Lyashevska, O., "How many dimensions of biodiversity do we need?" 18 : 485-492, 2012

      39 Hur, M., "Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings" 77 (77): 7611-7619, 2011

      40 Oh, Y. M., "Distinctive bacterial communities in the rhizoplane of four tropical tree species" 64 (64): 1018-1027, 2012

      41 Rousk, J., "Contrasting soil pH effects on fungal and bacterial growth suggest functional redundancy in carbon mineralization" 75 (75): 1589-1596, 2009

      42 Winarno, R., "Competition between Rhizobium strains in nodule formation : Interaction between nodulating and non-nodulating strains" 51 (51): 135-142, 1979

      43 Shi, C., "Comparison of bacterial communities in soil between nematode-infected and nematode-uninfected Pinus massoniana pinewood forest" 85 : 11-20, 2015

      44 Štursová, M., "Cellulose utilization in forest litter and soil : Identification of bacterial and fungal decomposers" 80 (80): 735-746, 2012

      45 Paillet, Y., "Biodiversity differences between managed and unmanaged forests : Meta‐analysis of species richness in Europe" 24 (24): 101-112, 2010

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      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2027 평가예정 재인증평가 신청대상 (재인증)
      2021-01-01 평가 등재학술지 유지 (재인증) KCI등재
      2018-01-09 학회명변경 한글명 : 한국임학회 -> 한국산림과학회
      영문명 : 미등록 -> Korean Society of Forest Science
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      2018-01-01 학술지명변경 한글명 : 한국임학회지 -> 한국산림과학회지
      외국어명 : Journal of Korean Forest Society -> Journal of Korean Society of Forest Science
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      2018-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2015-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
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      2007-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2005-10-10 학술지등록 한글명 : 한국임학회지
      외국어명 : Journal of Korean Forest Society
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      2004-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
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      1999-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.7 0.7 0.65
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.65 0.62 0.871 0.12
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