RISS 학술연구정보서비스

검색
다국어 입력

http://chineseinput.net/에서 pinyin(병음)방식으로 중국어를 변환할 수 있습니다.

변환된 중국어를 복사하여 사용하시면 됩니다.

예시)
  • 中文 을 입력하시려면 zhongwen을 입력하시고 space를누르시면됩니다.
  • 北京 을 입력하시려면 beijing을 입력하시고 space를 누르시면 됩니다.
닫기
    인기검색어 순위 펼치기

    RISS 인기검색어

      KCI등재 SCIE SCOPUS

      Next-generation sequencing for the genetic characterization of Maedi/Visna virus isolated from the northwest of China

      한글로보기

      https://www.riss.kr/link?id=A107922353

      • 0

        상세조회
      • 0

        다운로드
      서지정보 열기
      • 내보내기
      • 내책장담기
      • 공유하기
      • 오류접수

      부가정보

      다국어 초록 (Multilingual Abstract)

      Background: Maedi/Visna virus (MVV) is a contagious viral pathogen that causes considerable economic losses to the sheep industry worldwide. Objectives: In China, MVV has been detected in several regions, but its molecular characteristics and genetic ...

      Background: Maedi/Visna virus (MVV) is a contagious viral pathogen that causes considerable economic losses to the sheep industry worldwide.
      Objectives: In China, MVV has been detected in several regions, but its molecular characteristics and genetic variations were not thoroughly investigated.
      Methods: Therefore, in this study, we conducted next-generation sequencing on an MVV strain obtained from northwest China to reveal its genetic evolution via phylogenetic analysis.
      Results: A MVV strain obtained from Inner Mongolia (NM) of China was identified. Sequence analysis indicated that its whole-genome length is 9193 bp. Homology comparison of nucleotides between the NM strain and reference strains showed that the sequence homology of gag and env were 77.1%–86.8% and 67.7%–75.5%, respectively. Phylogenetic analysis revealed that the NM strain was closely related to the reference strains isolated from America, which belong to the A2 type. Notably, there were 5 amino acid insertions in variable region 4 and a highly variable motif at the C-terminal of the surface glycoprotein (SU5).
      Conclusions: The present study is the first to show the whole-genome sequence of an MVV obtained from China. The detailed analyses provide essential information for understanding the genetic characteristics of MVV, and the results enrich the MVV library.

      더보기

      참고문헌 (Reference)

      1 Joffret ML, "Whole genome sequencing of enteroviruses species A to D by high-throughput sequencing : application for viral mixtures" 9 : 2339-, 2018

      2 Ramírez H, "Small ruminant lentiviruses : genetic variability, tropism and diagnosis" 5 (5): 1175-1207, 2013

      3 Sun Y, "Serological investigation of caprine arthritis encephalitis and ovine progressive pneumoniina in 11 provinces of China" 48 (48): 34-38, 2018

      4 Carrozza ML, "Seroconversion against SU5 derived synthetic peptides in sheep experimentally infected with different SRLV genotypes" 137 (137): 369-374, 2009

      5 Hötzel I, "Sequence similarity between the envelope surface unit(SU)glycoproteins of primate and small ruminant lentiviruses" 69 (69): 47-54, 2000

      6 Michiels R, "Phylogenetic analysis of Belgian small ruminant lentiviruses supports cross species virus transmission and identifies new subtype b5 strains" 9 (9): 183-, 2020

      7 Shah C, "Phylogenetic analysis and reclassification of caprine and ovine lentiviruses based on 104 new isolates : evidence for regular sheep-to-goat transmission and worldwide propagation through livestock trade" 319 (319): 12-26, 2004

      8 Singh R, "Pathology and polymerase chain reaction detection of ovine progressive pneumonia(maedi)cases in slaughtered sheep in India" 10 (10): 1401-1406, 2017

      9 Slatko BE, "Overview of next-generation sequencing technologies" 122 (122): e59-, 2018

      10 Schuster SC, "Next-generation sequencing transforms today's biology" 5 (5): 16-18, 2008

      1 Joffret ML, "Whole genome sequencing of enteroviruses species A to D by high-throughput sequencing : application for viral mixtures" 9 : 2339-, 2018

      2 Ramírez H, "Small ruminant lentiviruses : genetic variability, tropism and diagnosis" 5 (5): 1175-1207, 2013

      3 Sun Y, "Serological investigation of caprine arthritis encephalitis and ovine progressive pneumoniina in 11 provinces of China" 48 (48): 34-38, 2018

      4 Carrozza ML, "Seroconversion against SU5 derived synthetic peptides in sheep experimentally infected with different SRLV genotypes" 137 (137): 369-374, 2009

      5 Hötzel I, "Sequence similarity between the envelope surface unit(SU)glycoproteins of primate and small ruminant lentiviruses" 69 (69): 47-54, 2000

      6 Michiels R, "Phylogenetic analysis of Belgian small ruminant lentiviruses supports cross species virus transmission and identifies new subtype b5 strains" 9 (9): 183-, 2020

      7 Shah C, "Phylogenetic analysis and reclassification of caprine and ovine lentiviruses based on 104 new isolates : evidence for regular sheep-to-goat transmission and worldwide propagation through livestock trade" 319 (319): 12-26, 2004

      8 Singh R, "Pathology and polymerase chain reaction detection of ovine progressive pneumonia(maedi)cases in slaughtered sheep in India" 10 (10): 1401-1406, 2017

      9 Slatko BE, "Overview of next-generation sequencing technologies" 122 (122): e59-, 2018

      10 Schuster SC, "Next-generation sequencing transforms today's biology" 5 (5): 16-18, 2008

      11 Skraban R, "Naturally occurring mutations within 39 amino acids in the envelope glycoprotein of Maedi-Visna virus alter the neutralization phenotype" 73 (73): 8064-8072, 1999

      12 Tanaka M, "Mutations of conserved residues in the major homology region arrest assembling HIV-1 gag as a membrane-targeted intermediate containing genomic RNA and cellular proteins" 90 (90): 1944-1963, 2015

      13 Olech M, "Molecular characterization of small ruminant lentiviruses of subtype A5 detected in naturally infected but clinically healthy goats of Carpathian breed" 9 (9): 992-, 2020

      14 Pépin M, "Maedi-Visna virus infection in sheep: a review" 29 (29): 341-367, 1998

      15 Gomez-Lucia E, "Maedi-Visna virus : current perspectives" 9 : 11-21, 2018

      16 Lu R, "Genomic characterisation and epidemiology of 2019 novel coronavirus : implications for virus origins and receptor binding" 395 (395): 565-574, 2020

      17 Grego E, "Genetic heterogeneity of small ruminant lentiviruses involves immunodominant epitope of capsid antigen and affects sensitivity of single-strain-based immunoassay" 9 (9): 828-832, 2002

      18 Muz D, "First molecular characterization of Visna/Maedi viruses from naturally infected sheep in Turkey" 158 (158): 559-570, 2013

      19 Kalogianni AI, "Etiology, epizootiology and control of MaediVisna in dairy sheep: a review" 10 (10): E616-, 2020

      20 Olech M, "Epidemiological survey in single-species flocks from Poland reveals expanded genetic and antigenic diversity of small ruminant lentiviruses" 13 (13): e0193892-, 2018

      21 Li R, "De novo assembly of human genomes with massively parallel short read sequencing" 20 (20): 265-272, 2010

      22 "Chapter 3.7.2 Caprine Arthritis/Encephalitis and Maedi-Visna" OIE

      23 Simpson JT, "ABySS : a parallel assembler for short read sequence data" 19 (19): 1117-1123, 2009

      24 Zhang KS, "A seroprevalence survey of Maedi-Visna among twenty-four ovine floks from twelve regions of China" 12 (12): 2321-2323, 2013

      더보기

      분석정보

      View

      상세정보조회

      0

      Usage

      원문다운로드

      0

      대출신청

      0

      복사신청

      0

      EDDS신청

      0

      동일 주제 내 활용도 TOP

      더보기

      주제

      연도별 연구동향

      연도별 활용동향

      연관논문

      연구자 네트워크맵

      공동연구자 (7)

      유사연구자 (20) 활용도상위20명

      인용정보 인용지수 설명보기

      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2009-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2006-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2005-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2003-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
      더보기

      학술지 인용정보

      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 1.08 0.11 0.76
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.61 0.51 0.245 0.05
      더보기

      이 자료와 함께 이용한 RISS 자료

      나만을 위한 추천자료

      해외이동버튼