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      Twelve previously unrecorded bacterial species, isolated from the Nakdong River, South Korea

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      https://www.riss.kr/link?id=A107494630

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      다국어 초록 (Multilingual Abstract)

      During a survey of indigenous prokaryotic species diversity of the upstream Nakdong River, South Korea, 12 bacterial strains were isolated for further analysis. These bacterial strains were identified showing at least 98.7% 16S rRNA gene sequence similarity with known bacterial species that were previously unreported in South Korea. The 12 bacterial strains were phylogenetically diverse and assigned to four classes, eight orders, nine families, and ten different genera. The isolates were identified as Leucobacter holotrichiae (99.1%), Leucobacter tardus (99.9%), Rhodococcus rhodochrous (99.9%), Tessaracoccus oleiagri (100%), and Paeniglutamicibacter cryotolerans (99.3%), of the class Actinobacteria; Bacillus coagulans (99.7%) and Bacillus wudalianchiensis (99.1%) of the class Bacilli; Ochrobactrum pseudogrignonense (99.2%) and Paracoccus thiocyanatus (100%) of the class Alphaproteobacteria; and Ideonella azotifigens (99.0%), Polaromonas glacialis (99.3%), and Herbaspirillum seropedicae (99.5%) of the class Betaproteobacteria. The cellular and colonial morphology, biochemical properties, and phylogenetic position of these isolates were examined, and species descriptions are provided.
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      During a survey of indigenous prokaryotic species diversity of the upstream Nakdong River, South Korea, 12 bacterial strains were isolated for further analysis. These bacterial strains were identified showing at least 98.7% 16S rRNA gene sequence simi...

      During a survey of indigenous prokaryotic species diversity of the upstream Nakdong River, South Korea, 12 bacterial strains were isolated for further analysis. These bacterial strains were identified showing at least 98.7% 16S rRNA gene sequence similarity with known bacterial species that were previously unreported in South Korea. The 12 bacterial strains were phylogenetically diverse and assigned to four classes, eight orders, nine families, and ten different genera. The isolates were identified as Leucobacter holotrichiae (99.1%), Leucobacter tardus (99.9%), Rhodococcus rhodochrous (99.9%), Tessaracoccus oleiagri (100%), and Paeniglutamicibacter cryotolerans (99.3%), of the class Actinobacteria; Bacillus coagulans (99.7%) and Bacillus wudalianchiensis (99.1%) of the class Bacilli; Ochrobactrum pseudogrignonense (99.2%) and Paracoccus thiocyanatus (100%) of the class Alphaproteobacteria; and Ideonella azotifigens (99.0%), Polaromonas glacialis (99.3%), and Herbaspirillum seropedicae (99.5%) of the class Betaproteobacteria. The cellular and colonial morphology, biochemical properties, and phylogenetic position of these isolates were examined, and species descriptions are provided.

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      참고문헌 (Reference)

      1 Kim, T., "Tracing river water versus wastewater sources of trace elements using rare earth ele-ments in the Nakdong River estuarine waters" 160 : 111589-, 2020

      2 Fitch, W. M., "Toward defining the course of evolution: minimum change for a specific tree topology" 20 : 406-416, 1971

      3 Saitou, N., "The neighbor-joining method: a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      4 Lee, J. H., "Spatial distribution of polycyclic aromatic hydrocarbon and polychlorinated biphenyl sources in the Nakdong River Estuary, South Korea" 52 (52): 1173-1183, 2017

      5 Tekile, A., "Mini-review on river eutrophication and bottom improvement techniques, with special emphasis on the Nakdong River" 30 : 113-121, 2015

      6 Kim, K, "Microbial Diversity Analysis of Sediment from Nakdong River Estuary in the Republic of Korea Using 16S rRNA Gene Amplicon Sequencing" 7 (7): e01186-18, 2018

      7 Kumar, S., "MEGA7: mole-cular evolutionary genetics analysis version 7.0 for bigger datasets" 33 : 1870-1874, 2016

      8 Yoon, S. H., "Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies" 67 : 1613-1617, 2017

      9 Oh, S. M., "Identification of estrogen-like effects and biologically active compounds in river water using bioassays and chemical analysis" 407 (407): 5787-5794, 2009

      10 Felsenstein, J., "Evolutionary trees from DNA sequences: a maximum likelihood approach" 17 : 368-376, 1981

      1 Kim, T., "Tracing river water versus wastewater sources of trace elements using rare earth ele-ments in the Nakdong River estuarine waters" 160 : 111589-, 2020

      2 Fitch, W. M., "Toward defining the course of evolution: minimum change for a specific tree topology" 20 : 406-416, 1971

      3 Saitou, N., "The neighbor-joining method: a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      4 Lee, J. H., "Spatial distribution of polycyclic aromatic hydrocarbon and polychlorinated biphenyl sources in the Nakdong River Estuary, South Korea" 52 (52): 1173-1183, 2017

      5 Tekile, A., "Mini-review on river eutrophication and bottom improvement techniques, with special emphasis on the Nakdong River" 30 : 113-121, 2015

      6 Kim, K, "Microbial Diversity Analysis of Sediment from Nakdong River Estuary in the Republic of Korea Using 16S rRNA Gene Amplicon Sequencing" 7 (7): e01186-18, 2018

      7 Kumar, S., "MEGA7: mole-cular evolutionary genetics analysis version 7.0 for bigger datasets" 33 : 1870-1874, 2016

      8 Yoon, S. H., "Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies" 67 : 1613-1617, 2017

      9 Oh, S. M., "Identification of estrogen-like effects and biologically active compounds in river water using bioassays and chemical analysis" 407 (407): 5787-5794, 2009

      10 Felsenstein, J., "Evolutionary trees from DNA sequences: a maximum likelihood approach" 17 : 368-376, 1981

      11 Felsenstein, J, "Confidence limits on phylogenies : an app-roach using the bootstrap" 39 : 783-791, 1985

      12 Glöckner, F. O., "Compara-tive 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria" 66 : 5053-5065, 2000

      13 Newton, R. J., "A guide to the natural history of freshwater lake bacteria" 75 : 14-49, 2011

      14 Weisburg, W. G., "16S ribosomal DNA amplification for phylogenetic study" 173 : 697-703, 1991

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      2028 평가예정 재인증평가 신청대상 (재인증)
      2022-01-01 평가 등재학술지 유지 (재인증) KCI등재
      2019-01-01 평가 등재학술지 선정 (계속평가) KCI등재
      2018-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2017-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2015-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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