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      KCI등재 SCOPUS SCIE

      Pressure-Overload Cardiac Hypertrophy Is Associated with Distinct Alternative Splicing Due to Altered Expression of Splicing Factors

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      https://www.riss.kr/link?id=A103927143

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      다국어 초록 (Multilingual Abstract)

      Chronic pressure-overload cardiac hypertrophy is associated with an increased risk of morbidity/mortality, largely due to maladaptive remodeling and dilatation that pro-gresses to dilated cardiomyopathy. Alternative splicing is an important biological mechanism that generates proteomic complexity and diversity. The recent development of next-generation RNA sequencing has improved our understanding of the qualitative signatures associated with alternative splicing in various biological conditions. However, the role of alternative splicing in cardiac hypertrophy is yet unknown. The present study employed RNA-Seq and a bioinformatic approach to detect the RNA splicing regulatory elements involved in alternative splicing during pressure-overload cardiac hypertrophy. We found GC-rich exonic motifs that regulate intron retention in 5 UTRs and AT-rich exonic motifs that are involved in exclusion of the AT-rich elements that cause mRNA instability in 3 UTRs. We also identified motifs in the intronic regions involved in exon exclusion and inclusion, which predicted splicing factors that bind to these motifs. We found, through Western blotting, that the expression levels of three splicing factors, ESRP1, PTB and SF2/ASF, were significantly altered during cardiac hypertrophy. Collec-tively, the present results suggest that chronic pressure-overload hypertrophy is closely associated with distinct alternative splicing due to altered expression of splicing factors.
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      Chronic pressure-overload cardiac hypertrophy is associated with an increased risk of morbidity/mortality, largely due to maladaptive remodeling and dilatation that pro-gresses to dilated cardiomyopathy. Alternative splicing is an important biological...

      Chronic pressure-overload cardiac hypertrophy is associated with an increased risk of morbidity/mortality, largely due to maladaptive remodeling and dilatation that pro-gresses to dilated cardiomyopathy. Alternative splicing is an important biological mechanism that generates proteomic complexity and diversity. The recent development of next-generation RNA sequencing has improved our understanding of the qualitative signatures associated with alternative splicing in various biological conditions. However, the role of alternative splicing in cardiac hypertrophy is yet unknown. The present study employed RNA-Seq and a bioinformatic approach to detect the RNA splicing regulatory elements involved in alternative splicing during pressure-overload cardiac hypertrophy. We found GC-rich exonic motifs that regulate intron retention in 5 UTRs and AT-rich exonic motifs that are involved in exclusion of the AT-rich elements that cause mRNA instability in 3 UTRs. We also identified motifs in the intronic regions involved in exon exclusion and inclusion, which predicted splicing factors that bind to these motifs. We found, through Western blotting, that the expression levels of three splicing factors, ESRP1, PTB and SF2/ASF, were significantly altered during cardiac hypertrophy. Collec-tively, the present results suggest that chronic pressure-overload hypertrophy is closely associated with distinct alternative splicing due to altered expression of splicing factors.

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      참고문헌 (Reference)

      1 Lim, K. H., "Using positional distribution to identify splicing elements and predict pre-mRNA processing defects in human genes" 108 : 11093-11098, 2011

      2 Taft, R. J., "The relationship between non-protein-coding DNA and eukaryotic complexity" 29 : 288-299, 2007

      3 Ladd, A. N., "The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing" 21 : 1285-1296, 2001

      4 Jianhua Zhou, "Targeting RNA-Splicing for SMA Treatment" 한국분자세포생물학회 33 (33): 223-228, 2012

      5 Reinke, L. M., "Snail represses the splicing regulator epithelial splicing regulatory protein 1 to promote epithelial-mesenchymal transition" 287 : 36435-36442, 2012

      6 Ames, E. G., "Sequencing of mRNA identifies re-expression of fetal splice variants in cardiac hypertrophy" 62 : 99-107, 2013

      7 Huh, G. S., "Regulation of alternative premRNA splicing by a novel repeated hexanucleotide element" 8 : 1561-1574, 1994

      8 Ren, S., "RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings" 22 : 806-821, 2012

      9 Eswaran, J., "RNA sequencing of cancer reveals novel splicing alterations" 3 : 1689-, 2013

      10 Fairbrother, W. G., "Predictive identification of exonic splicing enhancers in human genes" 297 : 1007-1013, 2002

      1 Lim, K. H., "Using positional distribution to identify splicing elements and predict pre-mRNA processing defects in human genes" 108 : 11093-11098, 2011

      2 Taft, R. J., "The relationship between non-protein-coding DNA and eukaryotic complexity" 29 : 288-299, 2007

      3 Ladd, A. N., "The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing" 21 : 1285-1296, 2001

      4 Jianhua Zhou, "Targeting RNA-Splicing for SMA Treatment" 한국분자세포생물학회 33 (33): 223-228, 2012

      5 Reinke, L. M., "Snail represses the splicing regulator epithelial splicing regulatory protein 1 to promote epithelial-mesenchymal transition" 287 : 36435-36442, 2012

      6 Ames, E. G., "Sequencing of mRNA identifies re-expression of fetal splice variants in cardiac hypertrophy" 62 : 99-107, 2013

      7 Huh, G. S., "Regulation of alternative premRNA splicing by a novel repeated hexanucleotide element" 8 : 1561-1574, 1994

      8 Ren, S., "RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings" 22 : 806-821, 2012

      9 Eswaran, J., "RNA sequencing of cancer reveals novel splicing alterations" 3 : 1689-, 2013

      10 Fairbrother, W. G., "Predictive identification of exonic splicing enhancers in human genes" 297 : 1007-1013, 2002

      11 Erkelenz, S., "Position-dependent splicing activation and repression by SR and hnRNP proteins rely on common mechanisms" 19 : 96-102, 2013

      12 Kuroyanagi, H., "Position-dependent and neuron-specific splicing regulation by the CELF family RNA-binding protein UNC-75 in Caenorhabditis elegans" 41 : 4015-4025, 2013

      13 Cha, H., "PICOT is a critical regulator of cardiac hypertrophy and cardiomyocyte contractility" ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD 45 : 796-803, 2008

      14 Wong, J. J., "Orchestrated intron retention regulates normal granulocyte differentiation" 154 : 583-595, 2013

      15 Kalsotra, A., "MicroRNAs coordinate an alternative splicing network during mouse postnatal heart development" 24 : 653-658, 2010

      16 Gooding, C., "MBNL1 and PTB cooperate to repress splicing of Tpm1 exon 3" 41 : 4765-4782, 2013

      17 Taggart, A. J., "Large-scale mapping of branchpoints in human pre-mRNA transcripts in vivo" 19 : 719-721, 2012

      18 Waterston, R. H., "Initial sequencing and comparative analysis of the mouse genome" 420 : 520-562, 2002

      19 홍성의, "Identification of mouse heart transcriptomic network sensitive to various heart diseases" Wiley - VCH Verlag GmbH & CO. KGaA 3 (3): 648-658, 2008

      20 Yamashita, A., "Hexanucleotide motifs mediate recruitment of the RNA elimination machinery to silent meiotic genes" 2 : 120014-, 2012

      21 Dittmar, K. A., "Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing" 32 : 1468-1482, 2012

      22 Marcel, V., "G-quadruplex structures in TP53 intron 3 : role in alternative splicing and in production of p53 mRNA isoforms" 32 : 271-278, 2011

      23 Zuo, P., "Functional domains of the human splicing factor ASF/SF2" 12 : 4727-4737, 1993

      24 Galante, P. A., "Detection and evaluation of intron retention events in the human transcriptome" 10 : 757-765, 2004

      25 Kalari, K. R., "Deep sequence analysis of non-small cell lung cancer : integrated analysis of gene expression, alternative splicing, and single nucleotide variations in lung adenocarcinomas with and without oncogenic KRAS mutations" 2 : 12-, 2012

      26 Song, H. K., "Deep RNA sequencing reveals novel cardiac transcriptomic signatures for physiological and pathological hypertrophy" 7 : e35552-, 2012

      27 Park, J. Y., "Comparative analysis of mRNA isoform expression in cardiac hypertrophy and deve-lopment reveals multiple post-transcriptional regulatory modules" 6 : e22391-, 2011

      28 Vencio, R. Z., "Bayesian model accounting for within-class biological variability in serial analysis of gene expression(SAGE)" 5 : 119-, 2004

      29 Arrisi-Mercado, P., "An exonic splicing enhancer offsets the atypical GU-rich 3′ splice site of human apolipoprotein A-II exon 3" 279 : 39331-39339, 2004

      30 Warzecha, C. C., "An ESRPregulated splicing programme is abrogated during the epithelialmesenchymal transition" 29 : 3286-3300, 2010

      31 Yae, T., "Alternative splicing of CD44 mRNA by ESRP1 enhances lung colonization of metastatic cancer cell" 3 : 883-, 2012

      32 Kim, E., "Alternative splicing and disease" 5 : 17-19, 2008

      33 Barreau, C., "AU-rich elements and associated factors : are there unifying principles?" 33 : 7138-7150, 2005

      34 Hirose, T., "A spliceosomal intron binding protein, IBP160, links position-dependent assembly of intron-encoded box C/D snoRNP to pre-mRNA splicing" 23 : 673-684, 2006

      35 Hastings, M. L., "A purinerich intronic element enhances alternative splicing of thyroid hormone receptor mRNA" 7 : 859-874, 2001

      36 Beltran, M., "A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition" 22 : 756-769, 2008

      37 Das, D., "A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing" 35 : 4845-4857, 2007

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      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
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      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 2.77 0.19 1.85
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      1.37 1.11 0.379 0.03
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