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    Characterization of Facultative Sulfur-oxidizing Marinobacter sp.BR13 Isolated from Marine Sediment of Yellow Sea, Korea

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    https://www.riss.kr/link?id=A104738701

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    다국어 초록 (Multilingual Abstract) kakao i 다국어 번역

    Marine sediment was collected from the Yellow Sea, Korea, and enriched using 1 mM thiosulfate under aerobic conditions. After 2 weeks, a facultative sulfur-oxidizing strain, BR13, was isolated. Phylogenetic analysis based on the 16S rRNA gene sequence showed that this strain belonged to the genus Marinobacter in the gamma-proteobacteria and was most closely related to Marinobacter pelagius H225T (99.5% 16S rRNA gene sequence similarity) and Marinobacter koreensis DD-M3T (97.7% 16S rRNA gene sequence similarity). The isolate was a sulfur-oxidizer, Gram-negative, aerobic, and slightly halophilic bacterium and grew in 0.5-9% NaCl at 7-37ºC. Strain BR13 shared
    some physiological and biochemical properties with Marinobacter pelagius H225T and Marinobacter koreensis DD-M3T. The G+C content of the genomic DNA of strain BR13 was 58.4 mol%. Strain BR13 possessed C16:0, summed feature 4 (C16:1 ω7c and/or C15:1iso 2OH), C16:0 N alcohol, and C18:1 ω9c
    as the major cellular fatty acids. Our results showed that strain BR13 (=KCTC 22253 =JCM 15135) is a novel facultative sulfur-oxidizing strain in the genus of Marinobacter.
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    Marine sediment was collected from the Yellow Sea, Korea, and enriched using 1 mM thiosulfate under aerobic conditions. After 2 weeks, a facultative sulfur-oxidizing strain, BR13, was isolated. Phylogenetic analysis based on the 16S rRNA gene sequence...

    Marine sediment was collected from the Yellow Sea, Korea, and enriched using 1 mM thiosulfate under aerobic conditions. After 2 weeks, a facultative sulfur-oxidizing strain, BR13, was isolated. Phylogenetic analysis based on the 16S rRNA gene sequence showed that this strain belonged to the genus Marinobacter in the gamma-proteobacteria and was most closely related to Marinobacter pelagius H225T (99.5% 16S rRNA gene sequence similarity) and Marinobacter koreensis DD-M3T (97.7% 16S rRNA gene sequence similarity). The isolate was a sulfur-oxidizer, Gram-negative, aerobic, and slightly halophilic bacterium and grew in 0.5-9% NaCl at 7-37ºC. Strain BR13 shared
    some physiological and biochemical properties with Marinobacter pelagius H225T and Marinobacter koreensis DD-M3T. The G+C content of the genomic DNA of strain BR13 was 58.4 mol%. Strain BR13 possessed C16:0, summed feature 4 (C16:1 ω7c and/or C15:1iso 2OH), C16:0 N alcohol, and C18:1 ω9c
    as the major cellular fatty acids. Our results showed that strain BR13 (=KCTC 22253 =JCM 15135) is a novel facultative sulfur-oxidizing strain in the genus of Marinobacter.

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    참고문헌 (Reference)

    1 Campbell BJ, "The versatile epsilon-proteobacteria: key players in sulphidic habitats" Nat Rev Microbiol 4 : 458-468, 2006

    2 Saitou N, "The neighbor-joining method: a new method for reconstructing phylogenetic trees" Mol Bio Evol 4 : 406-425, 1987

    3 Kimura M, "The Neutral Theory of Molecular Evolution" Cambridge University Press 1983

    4 Thompson JD, "The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools" Nucleic Acids Res 24 : 4876-4882, 1997

    5 Levring T, "Some culture experiments with Ulva and artificial seawater" Levring T (1946) Some culture experiments with Ulva and artificial seawater. Kungl Fysiografiska Sällsk Lund Förhandlingar 16, 45-56. 16 : 45-56, 1946

    6 Mesbah M, "Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography" Int J Syst Bacteriol 39 : 159-167, 1989

    7 Friedrich CG, "Oxidation of reduced inorganic sulfur compounds by bacteria: emergence of a common mechanism?" Appl Environ Microbiol 67 : 2873-2882, 2001

    8 Buck JD, "Nonstaining (KOH) method for determination of Gram reactions of marine bacteria" Appl Environ Microbiol 44 : 992-993, 1982

    9 Zhuang DC, "Marinobacter zhanjiangensis sp. nov., a marine bacterium isolated from sea water of a tidal flat of the South China Sea"

    10 Handley KM, "Marinobacter santoriniensis sp. nov., an arsenate-respiring and arseniteoxidizing bacterium isolated from hydrothermal sediment" Int J Syst Evol Microbiol 59 : 886-892, 2009

    1 Campbell BJ, "The versatile epsilon-proteobacteria: key players in sulphidic habitats" Nat Rev Microbiol 4 : 458-468, 2006

    2 Saitou N, "The neighbor-joining method: a new method for reconstructing phylogenetic trees" Mol Bio Evol 4 : 406-425, 1987

    3 Kimura M, "The Neutral Theory of Molecular Evolution" Cambridge University Press 1983

    4 Thompson JD, "The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools" Nucleic Acids Res 24 : 4876-4882, 1997

    5 Levring T, "Some culture experiments with Ulva and artificial seawater" Levring T (1946) Some culture experiments with Ulva and artificial seawater. Kungl Fysiografiska Sällsk Lund Förhandlingar 16, 45-56. 16 : 45-56, 1946

    6 Mesbah M, "Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography" Int J Syst Bacteriol 39 : 159-167, 1989

    7 Friedrich CG, "Oxidation of reduced inorganic sulfur compounds by bacteria: emergence of a common mechanism?" Appl Environ Microbiol 67 : 2873-2882, 2001

    8 Buck JD, "Nonstaining (KOH) method for determination of Gram reactions of marine bacteria" Appl Environ Microbiol 44 : 992-993, 1982

    9 Zhuang DC, "Marinobacter zhanjiangensis sp. nov., a marine bacterium isolated from sea water of a tidal flat of the South China Sea"

    10 Handley KM, "Marinobacter santoriniensis sp. nov., an arsenate-respiring and arseniteoxidizing bacterium isolated from hydrothermal sediment" Int J Syst Evol Microbiol 59 : 886-892, 2009

    11 Xu XW, "Marinobacter pelagius sp. nov., a moderately halophilic bacterium" Int J Syst Evol Microbiol 58 : 637-640, 2008

    12 Shieh WY, "Marinobacter lutaoensis sp. nov., a thermotolerant marine bacterium isolated from a coastal hot spring in Lutao" Can J Microbiol 49 : 244-252, 2003

    13 Kim BY, "Marinobacter koreensis sp. nov., isolated from sea sand in Korea" Int J Syst Evol Microbiol 56 : 2653-2656, 2006

    14 Gauthier MJ, "Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium" Int J Syst Bacteriol 42 : 568-576, 1992

    15 Kumar S, "MEGA3: Integrated Software for Molecular Evolutionary Genetics Analysis and Sequence Alignment" Brief Bioinform 5 : 150-163, 2004

    16 MIDI, "In Sherlock Microbial Identification System Operating Manual (Version 3.0)" MIDI Inc B8-B13, 1999

    17 Voroteliak V, "Improved colorimetric determination of urinary thiosulfate to study intermediate sulfur metabolism in humans" Clin Chem 39 : 2533-2534, 1993

    18 Ravenschlag K, "High bacterial diversity in permanently cold marine sediments" Appl Environ Microbiol 65 : 3982-3989, 1999

    19 Teske A, "Diversity of thiosulfate-oxidizing bacteria from marine sediments and hydrothermal vents" Appl Environ Microbiol 66 : 3125-3133, 2000

    20 Felsenstein J, "Confidence limit on phylogenies: an approach using the bootstrap" Evolution 39 : 783-791, 1985

    21 Hiraishi A, "Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection" J Gen Appl Microbiol 42 : 457-469, 1996

    22 PARK, SOO-JE, "Characterization of the Microbial Diversity in a Korean Solar Saltern by 16S rRNA Gene Analysis" 한국미생물·생명공학회 16 (16): 1640-1645, 2006

    23 Hall TA, "BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT" Nucl Acids Symp Ser 41 : 95-98, 1999

    24 Weisburg WG, "16S ribosomal DNA amplification for phylogenic study" J Bacteriol 173 : 697-703, 1991

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