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      Spirosoma luteolum sp. nov. isolated from water

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      https://www.riss.kr/link?id=A103767532

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      다국어 초록 (Multilingual Abstract) kakao i 다국어 번역

      A novel Gram-negative and rod-shaped bacterial strain, designatedas 16F6ET, was isolated from a water sample. Cellswere yellowish in color and catalase- and oxidase-positive.
      The strain grew at 10–37°C (optimum at 25°C) but not at 4and 42°C, and pH 5–7 (optimum at pH 7). It showed moderateresistance to gamma-ray irradiation. Comparative phylogeneticanalysis showed that strain 16F6ET belonged to thefamily Cytophagaceae of the class Cytophagia. Furthermore,this isolate showed relatively low 16S rRNA gene sequencesimilarities (90.7–93.1%) to the members of the genus Spirosoma.
      The major fatty acids were summed feature 3 (C16:1ω7c/C16:1 ω6c), C16:1 ω5c, C16:0 N alcohol, and C16:0. The polarlipid profile indicated presence of phosphatidylethanolamine,unknown aminophospholipids, an unknown amino lipid,unknown phospholipids, and unknown polar lipids. The predominantisoprenoid quinone was MK-7. The genomic DNAG+C content of strain 16F6ET was 56.5 mol%. Phenotypic,phylogenetic, and chemotaxonomic properties indicated thatisolate 16F6ET represents a novel species within the genusSpirosoma, for which the name Spirosoma luteolum sp. nov.
      is proposed. The type strain is 16F6ET (=KCTC 52199T =JCM31411T).
      번역하기

      A novel Gram-negative and rod-shaped bacterial strain, designatedas 16F6ET, was isolated from a water sample. Cellswere yellowish in color and catalase- and oxidase-positive. The strain grew at 10–37°C (optimum at 25°C) but not at 4and 42°C, and ...

      A novel Gram-negative and rod-shaped bacterial strain, designatedas 16F6ET, was isolated from a water sample. Cellswere yellowish in color and catalase- and oxidase-positive.
      The strain grew at 10–37°C (optimum at 25°C) but not at 4and 42°C, and pH 5–7 (optimum at pH 7). It showed moderateresistance to gamma-ray irradiation. Comparative phylogeneticanalysis showed that strain 16F6ET belonged to thefamily Cytophagaceae of the class Cytophagia. Furthermore,this isolate showed relatively low 16S rRNA gene sequencesimilarities (90.7–93.1%) to the members of the genus Spirosoma.
      The major fatty acids were summed feature 3 (C16:1ω7c/C16:1 ω6c), C16:1 ω5c, C16:0 N alcohol, and C16:0. The polarlipid profile indicated presence of phosphatidylethanolamine,unknown aminophospholipids, an unknown amino lipid,unknown phospholipids, and unknown polar lipids. The predominantisoprenoid quinone was MK-7. The genomic DNAG+C content of strain 16F6ET was 56.5 mol%. Phenotypic,phylogenetic, and chemotaxonomic properties indicated thatisolate 16F6ET represents a novel species within the genusSpirosoma, for which the name Spirosoma luteolum sp. nov.
      is proposed. The type strain is 16F6ET (=KCTC 52199T =JCM31411T).

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      참고문헌 (Reference)

      1 Saitou, N., "The neighbour-joining method : a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      2 Thompson, J. D., "The Clustal_X windows interface : flexible strategies for multiple sequence alignment aided by quality analysis tools" 24 : 4876-4882, 1997

      3 Stackebrandt, E., "Taxonomic note : a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology" 44 : 846-849, 1994

      4 Larkin, J.M., "Spirosomaceae, a new family to contain the genera Spirosoma Migula 1894, Flectobacillus Larkin et al. 1977, and Runella Larkin and Williams 1978" 28 : 595-596, 1978

      5 Finster, K. W., "Spirosoma spitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma" 59 : 839-844, 2009

      6 Baik, K. S., "Spirosoma rigui sp. nov., isolated from fresh water" 64 : 3230-3234, 2007

      7 Lee, J. J., "Spirosoma radiotolerans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil" 69 : 286-291, 2014

      8 Ten, L. N., "Spirosoma panaciterrae sp. nov., isolated from soil" 59 : 331-335, 2009

      9 Ahn, J. H., "Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma" 64 : 3230-3234, 2014

      10 Fries, J., "Spirosoma endophyticum sp. nov., isolated from Zn-and Cd-accumulating Salix caprea" 63 : 4586-4590, 2013

      1 Saitou, N., "The neighbour-joining method : a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      2 Thompson, J. D., "The Clustal_X windows interface : flexible strategies for multiple sequence alignment aided by quality analysis tools" 24 : 4876-4882, 1997

      3 Stackebrandt, E., "Taxonomic note : a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology" 44 : 846-849, 1994

      4 Larkin, J.M., "Spirosomaceae, a new family to contain the genera Spirosoma Migula 1894, Flectobacillus Larkin et al. 1977, and Runella Larkin and Williams 1978" 28 : 595-596, 1978

      5 Finster, K. W., "Spirosoma spitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma" 59 : 839-844, 2009

      6 Baik, K. S., "Spirosoma rigui sp. nov., isolated from fresh water" 64 : 3230-3234, 2007

      7 Lee, J. J., "Spirosoma radiotolerans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil" 69 : 286-291, 2014

      8 Ten, L. N., "Spirosoma panaciterrae sp. nov., isolated from soil" 59 : 331-335, 2009

      9 Ahn, J. H., "Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma" 64 : 3230-3234, 2014

      10 Fries, J., "Spirosoma endophyticum sp. nov., isolated from Zn-and Cd-accumulating Salix caprea" 63 : 4586-4590, 2013

      11 Chang, X., "Spirosoma arcticum sp. nov., isolated from high arctic glacial till" 64 : 3230-3234, 2014

      12 Mesbah, M., "Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography" 39 : 159-167, 1989

      13 Buck, J. D., "Non-staining(KOH)method for determination of Gram reactions of marine bacteria" 44 : 992-993, 1982

      14 Brooks, B. W., "Nomenclature for"Micrococcus radiodurans"and other radiation-resistant cocci : Deinococcaceae fam. nov. and Deinococcus gen. nov., including five species" 19 : 353-360, 1981

      15 Tamura, K., "MEGA5 : molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods" 28 : 2731-2739, 2011

      16 Komagata, K., "Lipid and cell-wall analysis in bacterial systematics" 19 : 1-207, 1987

      17 Kim, O. S., "Introducing EzTaxon-e : a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species" 62 : 716-721, 2012

      18 Wayne, L. G., "International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics" 37 : 463-464, 1987

      19 Sasser, M., "Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc., Newark, DE, USA" MIDI Inc 1990

      20 White, O., "Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1" 286 : 1571-1577, 1999

      21 Larkin, J.M., "Family I. Spirosomaceae Larkin and Borrall 1978, 595AL. Bergey’s Manual of Systematic Bacteriology, vol. 1" Williams and Wilkins 125-126, 1984

      22 Kimura, M., "Estimation of evolutionary distances between homologous nucleotide sequences. The neutral theory of molecular evolution" 78 : 454-458, 1981

      23 임상용, "Development of a Qualitative Dose Indicator for Gamma Radiation Using Lyophilized Deinococcus" 한국미생물·생명공학회 22 (22): 1296-1300, 2012

      24 Tamaoka, J., "Determination of DNA base composition by reversed phase high-performance liquid chromatography" 25 : 125-128, 1984

      25 Kämpfer, P., "Deinococcus aquatilis sp. nov., isolated from water" 58 : 2803-2806, 2008

      26 Im, W. T., "Deinococcus aquaticus sp. nov., isolated from fresh water, and Deinococcus caeni sp. nov., isolated from activated sludge" 58 : 2348-2353, 2008

      27 Frank, J. A., "Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes" 74 : 2461-2470, 2008

      28 Hiraishi, A., "Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection" 42 : 457-469, 1996

      29 Minnikin, D. E., "An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids" 2 : 233-241, 1984

      30 Lim, S., "A comparative evaluation of radiation-induced DNA damage using real-time PCR: influence of base composition" 165 : 430-437, 2006

      31 Weisburg, W. G., "16S ribosomal DNA amplification for phylogenetic study" 173 : 697-703, 1991

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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 1.76 0.2 1.22
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
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