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The complete chloroplast (cp) genome sequence of Neolitsea sericea was determined by Illumina sequencing. The complete cp genome was 152,446bp in length, containing a large single-copy region of 93,796 bp and a small single-copy region of 18,506bp, wh...
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RISS 인기검색어
https://www.riss.kr/link?id=A107863047
- 저자
- 발행기관
- 학술지명
- 권호사항
-
발행연도
2021
-
작성언어
English
- 주제어
-
등재정보
KCI등재,SCOPUS,ESCI
-
자료형태
학술저널
- 발행기관 URL
-
수록면
332-336(5쪽)
-
KCI 피인용횟수
0
- DOI식별코드
- 제공처
- 소장기관
-
0
상세조회 -
0
다운로드
부가정보
다국어 초록 (Multilingual Abstract)
The complete chloroplast (cp) genome sequence of Neolitsea sericea was determined by Illumina sequencing. The complete cp genome was 152,446bp in length, containing a large single-copy region of 93,796 bp and a small single-copy region of 18,506bp, which were separated by a pair of 20,072bp inverted repeats. A total of 112 unique genes were annotated, including 78 protein-coding genes (PCGs), 30 transfer RNAs, and four ribosomal RNAs. Among the PCGs, 18 genes contained one or two introns. A very low level of sequence variation between two cp genomes of N. sericea was found with seven insertions or deletions and only one single nucleotide polymorphism. An analysis using the maximum likelihood method showed that N. sericea was closely related to Actinodaphne trichocarpa.
The complete chloroplast (cp) genome sequence of Neolitsea sericea was determined by Illumina sequencing. The complete cp genome was 152,446bp in length, containing a large single-copy region of 93,796 bp and a small single-copy region of 18,506bp, which were separated by a pair of 20,072bp inverted repeats. A total of 112 unique genes were annotated, including 78 protein-coding genes (PCGs), 30 transfer RNAs, and four ribosomal RNAs. Among the PCGs, 18 genes contained one or two introns. A very low level of sequence variation between two cp genomes of N. sericea was found with seven insertions or deletions and only one single nucleotide polymorphism. An analysis using the maximum likelihood method showed that N. sericea was closely related to Actinodaphne trichocarpa.
참고문헌 (Reference)
1 조현진, "참식나무(Neolitsea sericea Koidz) 추출물을 이용한 한지의 염색특성" 한국펄프·종이공학회 39 (39): 60-67, 2007
2 이정현, "상록활엽수 3종의 한반도분포 및 자생북한계지" 한국식물분류학회 40 (40): 267-273, 2010
3 윤종학, "기후변화에 따른 한반도 참식나무 생육지 예측과 영향 평가" 한국환경영향평가학회 23 (23): 101-111, 2014
4 Chan, P. P., "tRNAscan-SE: Searching for tRNA genes in genomic sequences" 1962 : 1-14, 2019
5 Darriba, D., "jModelTest 2: More models, new heuristics and parallel computing" 9 : 772-, 2012
6 Choi, Y. G., "The second complete chloroplast genome sequence of the Viburnum erosum (Adoxaceae) showed a low level of intra-species variations" 5 : 271-272, 2020
7 Kim, Y., "The second complete chloroplast genome sequence of Pseudostellaria palibiniana (Takeda) Ohwi (Cryophyllaceae): Intraspecies variations based on geographical distribution" 4 : 1310-1311, 2019
8 Ohashi, H., "The northern limit of distribution of Neolitsea sericea (Blume) Koidz. (Lauraceae) in the Pacific side of Japan" 81 : 248-249, 2006
9 Park, J., "The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea" 4 : 1038-1040, 2019
10 Cho, M. -S., "The complete chloroplast genome of Korean Pyrus ussuriensis Maxim. (Rosaceae): Providing genetic background of two types of P. ussuriensis" 4 : 2424-2425, 2019
1 조현진, "참식나무(Neolitsea sericea Koidz) 추출물을 이용한 한지의 염색특성" 한국펄프·종이공학회 39 (39): 60-67, 2007
2 이정현, "상록활엽수 3종의 한반도분포 및 자생북한계지" 한국식물분류학회 40 (40): 267-273, 2010
3 윤종학, "기후변화에 따른 한반도 참식나무 생육지 예측과 영향 평가" 한국환경영향평가학회 23 (23): 101-111, 2014
4 Chan, P. P., "tRNAscan-SE: Searching for tRNA genes in genomic sequences" 1962 : 1-14, 2019
5 Darriba, D., "jModelTest 2: More models, new heuristics and parallel computing" 9 : 772-, 2012
6 Choi, Y. G., "The second complete chloroplast genome sequence of the Viburnum erosum (Adoxaceae) showed a low level of intra-species variations" 5 : 271-272, 2020
7 Kim, Y., "The second complete chloroplast genome sequence of Pseudostellaria palibiniana (Takeda) Ohwi (Cryophyllaceae): Intraspecies variations based on geographical distribution" 4 : 1310-1311, 2019
8 Ohashi, H., "The northern limit of distribution of Neolitsea sericea (Blume) Koidz. (Lauraceae) in the Pacific side of Japan" 81 : 248-249, 2006
9 Park, J., "The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea" 4 : 1038-1040, 2019
10 Cho, M. -S., "The complete chloroplast genome of Korean Pyrus ussuriensis Maxim. (Rosaceae): Providing genetic background of two types of P. ussuriensis" 4 : 2424-2425, 2019
11 Kwon, W., "The complete chloroplast genome of Korean Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier: Low genetic diversity between Korea and Japan" 4 : 959-960, 2019
12 Park, J., "The complete chloroplast genome of Campanula takesimana Nakai from Dokdo Island in Korea (Campanulaceae)" 6 : 135-137, 2021
13 Heo, K. -I., "The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): Investigation of intraspecific variations on its chloroplast genomes" 5 : 2264-2266, 2020
14 Kim, T.-W., "The Plants of Ulleungdo and Dokdo" Nature and Ecology 552-, 2019
15 Lee, J. -H., "Phylogeography and genetic diversity of East Asian Neolitsea sericea (Lauraceae) based on variations in chloroplast DNA sequences" 126 : 193-202, 2013
16 Li, L., "Phylogeny of Neolitsea (Lauraceae) inferred from Bayesian analysis of nrDNA ITS and ETS sequences" 269 : 203-221, 2007
17 유수창, "Phylogenetic position of Daphne genkwa (Thymelaeaceae) inferred from complete chloroplast data" 한국식물분류학회 51 (51): 171-175, 2021
18 Swofford, D. L., "PAUP*: Phylogenetic analyses using parsimony (*and other methods), version 4.0b10" Sinauer 2002
19 Greiner, S., "OrganellarGenome-DRAW (OGDRAW) version 1.3.1: Expended toolkit for the graphical visualization of organellar genomes" 47 : W59-W64, 2019
20 Yoon, W. -J., "Neolitsea sericea essential oil attenuates LPSinduced inflammation in RAW 264.7 macrophages by suppressing NF-κB and MAPK activation" 5 : 1311-1316, 2010
21 Huang, P., "Meinspermaceae through Capparaceae" Science Press 105-118, 2008
22 Katoh, K., "MAFFT multiple sequence alignment software version 7: Improvements in performance and usability" 30 : 772-780, 2013
23 Song, Y., "Evolutionary comparisons of the chloroplast genome in Lauraceae and insights into loss events in the Magnoliids" 9 : 2354-2364, 2017
24 Koidzumi, G, "Contributiones ad congnitionem Floræ Asiæ orientalis" 40 : 330-348, 1926
25 Qing, X., "Chemical constituents of plants from the genus Neolitsea" 20 : 61-75, 2014
26 Blume, C. L, "Bijdragen tot de flora von Nederlandsch Indië" Ter Lands Drukkerij 554-, 1826
27 이예은, "A report of the second chloroplast genome sequence in Veronica nakaiana (Plantaginaceae), an endemic species in Korea" 한국식물분류학회 51 (51): 109-114, 2021
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분석정보
인용정보 인용지수 설명보기
학술지 이력
| 연월일 | 이력구분 | 이력상세 | 등재구분 |
|---|---|---|---|
| 2024 | 평가예정 | 해외DB학술지평가 신청대상 (해외등재 학술지 평가) | |
| 2021-01-01 | 평가 | 등재학술지 선정 (해외등재 학술지 평가) |  |
| 2020-12-01 | 평가 | 등재후보로 하락 (해외등재 학술지 평가) |  |
| 2019-01-01 | 평가 | 등재학술지 유지 (계속평가) | |
| 2016-01-01 | 평가 | 등재학술지 선정 (계속평가) | |
| 2015-12-01 | 평가 | 등재후보로 하락 (기타) | |
| 2011-01-01 | 평가 | 등재 1차 FAIL (등재유지) | |
| 2009-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2007-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2006-09-14 | 학회명변경 | 영문명 : The Plant Taxonomic Society Of Korea -> The Korean Society of Plant Taxonomists | |
| 2004-01-01 | 평가 | 등재학술지 선정 (등재후보2차) | |
| 2003-01-01 | 평가 | 등재후보 1차 PASS (등재후보1차) | |
| 2002-01-01 | 평가 | 등재후보 1차 FAIL (등재후보1차) | |
| 2000-07-01 | 평가 | 등재후보학술지 선정 (신규평가) | |
학술지 인용정보
| 기준연도 | WOS-KCI 통합IF(2년) | KCIF(2년) | KCIF(3년) |
|---|---|---|---|
| 2016 | 0.23 | 0.23 | 0.26 |
| KCIF(4년) | KCIF(5년) | 중심성지수(3년) | 즉시성지수 |
| 0.27 | 0.43 | 0.521 | 0.08 |
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