Complete genome of Bacillus velezensis AYGS-17, a strain with antimicrobial activity isolated from sediment of Nakdong River in Korea

다국어 초록 (Multilingual Abstract)

Strain AYGS-17, isolated from sediment of the Nakdong River, exhibits antimicrobial activity. Its complete genome, sequenced using the PacBio Sequel platform, reveals a circular chromosome of 4.1 Mb with a GC content of 46.1%. The genome contains 4,118 genes, including 4,000 coding sequences (CDSs), 86 tRNAs, 27 rRNAs, and 5 ncRNAs. This genomic information provides insight into the genetic basis of the strain’s antibacterial activity.

참고문헌 (Reference)

1 Medema MH, "antiSMASH : rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences" 39 : W339-W346, 2011

2 Cohn F, "Untersuchungen über Bakterien" 1 : 127-224, 1872

3 Bortolaia V, "ResFinder 4.0 for predictions of phenotypes from genotypes" 75 : 3491-3500, 2020

4 Lee I, "OrthoANI : an improved algorithm and software for calculating average nucleotide identity" 66 : 1100-1103, 2016

5 Chin CS, "Nonhybrid, finished microbial genome assemblies from longread SMRT sequencing data" 10 : 563-569, 2013

6 Tatusova T, "NCBI Prokaryotic Genome Annotation Pipeline" 44 : 6614-6624, 2016

7 Jain C, "High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries" 9 : 5114-, 2018

8 Parks DH, "CheckM : assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes" 25 : 1043-1055, 2015

9 Koren S, "Canu : scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation" 27 : 722-736, 2017

10 Zhao H, "Biological activity of lipopeptides from Bacillus" 101 : 5951-5960, 2017

11 Stein T, "Bacillus subtilis antibiotics : structures, syntheses and specific functions" 56 : 845-857, 2005

12 Shleeva MO, "Bacillus licheniformis : a producer of antimicrobial substances, including antimycobacterials, which are feasible for medical applications" 15 : 1893-, 2023

13 Mohammed MJ, "Antimicrobial susceptibility testing of Bacillus anthracis : comparison of results obtained by using the National Committee for Clinical Laboratory Standards broth microdilution reference and Etest agar gradient diffusion methods" 40 : 1902-1907, 2002

14 Fiedler G, "Antibiotics resistance and toxin profiles of Bacillus cereus-group isolates from fresh vegetables from German retail markets" 19 : 250-, 2019

15 정대원 ; 이영경 ; 황병수 ; 정유진 ; 최아영 ; 김민진 ; 김명진 ; 김태진 ; 오영택, "Antibacterial activity effect of Bacillus velezensis AYGS-17 extract against periodontal and cariogenic pathogens" 59 : 197-203, 2023