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      Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018

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      https://www.riss.kr/link?id=A107494628

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      다국어 초록 (Multilingual Abstract)

      In 2018, as a subset study to discover indigenous prokaryotic species in Korea, a total of 18 unreported bacterial strains were discovered. From the high 16S rRNA gene sequence similarity (>98.8%) and formation of a robust phylogenetic clade, it was determined that each strain belonged an independent and predefined bacterial species. There were no official report that these 18 species were previously described in Korea; therefore, one strain of Williamsia, one strain of Rhodococcus, three strains of Microbacterium, three strains of Agromyces, one strain of Arthrobacter, one strain of Paeniglutamicibacter, one strain of Pseudarthrobacter, one strain of Nocardioides, one strain of Fibrella, one strain of Hymenobacter, one strain of Deinococcus, two strains of Fictibacillus, and one strain of Paenibacillus are described as unreported bacterial species in Korea. Gram reaction, basic biochemical characteristics, and colony and cell morphologies are described in the species description section.
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      In 2018, as a subset study to discover indigenous prokaryotic species in Korea, a total of 18 unreported bacterial strains were discovered. From the high 16S rRNA gene sequence similarity (>98.8%) and formation of a robust phylogenetic clade, it wa...

      In 2018, as a subset study to discover indigenous prokaryotic species in Korea, a total of 18 unreported bacterial strains were discovered. From the high 16S rRNA gene sequence similarity (>98.8%) and formation of a robust phylogenetic clade, it was determined that each strain belonged an independent and predefined bacterial species. There were no official report that these 18 species were previously described in Korea; therefore, one strain of Williamsia, one strain of Rhodococcus, three strains of Microbacterium, three strains of Agromyces, one strain of Arthrobacter, one strain of Paeniglutamicibacter, one strain of Pseudarthrobacter, one strain of Nocardioides, one strain of Fibrella, one strain of Hymenobacter, one strain of Deinococcus, two strains of Fictibacillus, and one strain of Paenibacillus are described as unreported bacterial species in Korea. Gram reaction, basic biochemical characteristics, and colony and cell morphologies are described in the species description section.

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      참고문헌 (Reference)

      1 성치남, "[MINIREVIEW] Taxonomic hierarchy of the phylum Firmicutes and novel Firmicutes species originated from various environments in Korea" 한국미생물학회 56 (56): 1-10, 2018

      2 Kimura, M, "The neutral theory of molecular evolution" Cambridge University Press 1983

      3 Saitou, N., "The neighbor-joining method : a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      4 Weisburg, W. G., "The Deinococcus-Thermus Phylum and the Effect of rRNA Composition on Phylogenetic Tree Construction" 11 (11): 128-134, 1989

      5 최철영, "Physiological effects of various light spectra on oxidative stress by starvation in olive flounder, Paralichthys olivaceus" 대한독성 유전단백체 학회 14 (14): 399-408, 2018

      6 Edgar, R. C., "MUSCLE : multiple sequence alignment with high accuracy and high throughput" 32 : 1792-1797, 2004

      7 Kumar, S., "MEGA7 : Molec-ular Evolutionary Genetics Analysis version 7. 0 for bigger datadets" 33 : 1870-1874, 2016

      8 Kim, O. S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncul-tured species" 62 : 716-721, 2012

      9 Zhang, Q., "Hymenobacter xinjiangensis sp. nov., a radiation-resistant bacterium isolated from the desert of Xinjiang, China" 57 : 1752-1756, 2007

      10 Srinivasan, S., "Hymenobacter terrae sp. nov., a bac-terium isolated from soil" 70 : 643-650, 2015

      1 성치남, "[MINIREVIEW] Taxonomic hierarchy of the phylum Firmicutes and novel Firmicutes species originated from various environments in Korea" 한국미생물학회 56 (56): 1-10, 2018

      2 Kimura, M, "The neutral theory of molecular evolution" Cambridge University Press 1983

      3 Saitou, N., "The neighbor-joining method : a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      4 Weisburg, W. G., "The Deinococcus-Thermus Phylum and the Effect of rRNA Composition on Phylogenetic Tree Construction" 11 (11): 128-134, 1989

      5 최철영, "Physiological effects of various light spectra on oxidative stress by starvation in olive flounder, Paralichthys olivaceus" 대한독성 유전단백체 학회 14 (14): 399-408, 2018

      6 Edgar, R. C., "MUSCLE : multiple sequence alignment with high accuracy and high throughput" 32 : 1792-1797, 2004

      7 Kumar, S., "MEGA7 : Molec-ular Evolutionary Genetics Analysis version 7. 0 for bigger datadets" 33 : 1870-1874, 2016

      8 Kim, O. S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncul-tured species" 62 : 716-721, 2012

      9 Zhang, Q., "Hymenobacter xinjiangensis sp. nov., a radiation-resistant bacterium isolated from the desert of Xinjiang, China" 57 : 1752-1756, 2007

      10 Srinivasan, S., "Hymenobacter terrae sp. nov., a bac-terium isolated from soil" 70 : 643-650, 2015

      11 Lee, J. J., "Hymenobacter swuensis sp. nov., a gamma-ra-diation-resistant bacteria isolated from mountain soil" 68 : 305-310, 2014

      12 Hirsch, P., "Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antartica soils and sandstone: bacteria of the Cytophaga/Flavobacterium/ Bacteroides line of phylogenetic descent" 21 : 374-383, 1998

      13 Su, S., "Hymenobacter kanuolensis sp. nov., a novel radiationresistant bacterium" 64 : 2108-2112, 2014

      14 Lee, J. J., "Hymenobacter aquaticus sp. nov., a radia-tion-resistant bacterium isolated from a river" 67 : 1206-1211, 2017

      15 Seon-A Jang, "Gamma irradiation-induced liver injury and its amelioration by red ginseng extract" 대한독성 유전단백체 학회 13 (13): 461-469, 2017

      16 Battista, J. R, "Deinococcus-ThermusGroup" eLS 1-12, 2016

      17 Selvam, K., "DdrA, DdrD, and PprA: components of UV and mitomy-cin C resistance in Deinococcus radiodurans R1" 8 (8): e69007-, 2013

      18 Felsenstein, J, "Confidence limits on phylogenies : an approach using the bootstrap" 39 : 783-791, 1985

      19 김명겸, "Complete genome sequence of Spirosoma pulveris JSH 5-14T , a bacterium isolated from a dust sample" 대한독성 유전단백체 학회 13 (13): 373-378, 2017

      20 Gayathri Sathiyaraj, "Complete genome sequence of Nibribacter radioresistens DG15C, a radiation resistant bacterium" 대한독성 유전단백체 학회 14 (14): 323-328, 2018

      21 Gayathri Sathiyaraj, "Complete genome sequence of Microvirga sp. 17mud 1-3, a radiation-resistant bacterium" 대한독성 유전단백체 학회 14 (14): 347-352, 2018

      22 Sathiyaraj Srinivasan, "Complete genome sequence of Hymenobacter sp. DG25A, a gamma radiation-resistant bacterium isolated from soil" 대한독성 유전단백체 학회 13 (13): 65-72, 2017

      23 Myung Kyum Kim, "Complete Genome Sequence of Hymenobacter sedentarius DG5BT, a Bacterium Resistant to Gamma Radiation" 대한독성 유전단백체 학회 13 (13): 199-205, 2017

      24 Im, S., "Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents" 36 : 781-789, 2013

      25 Wragg, P., "Compar-ison of Biolog GEN III MicroStation semi-automated bacterial identification system with matrix-assisted laser desorption ionization-time of flightmass spectrometry and 16S ribosomal RNA gene sequencing for the iden-tification of bacteria of veterinary interest" 105 : 16-21, 2014

      26 Hall, T. A., "BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT" Information Retrieval Ltd (41) : 95-98, 1999

      27 Miao, V., "Actinobacteria : the good, the bad, and the ugly" 98 : 143-150, 2010

      28 Weisburg, W. G., "16S ribosomal DNA amplification for phylogenetic study" 173 : 697-703, 1991

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      2028 평가예정 재인증평가 신청대상 (재인증)
      2022-01-01 평가 등재학술지 유지 (재인증) KCI등재
      2019-01-01 평가 등재학술지 선정 (계속평가) KCI등재
      2018-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2017-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2015-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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