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      KCI등재후보 SCOPUS SCIE

      Development of simple and rapid HLA-C genotyping method using an oligonucleotide microarray

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      https://www.riss.kr/link?id=A105874619

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      다국어 초록 (Multilingual Abstract)

      Human Leukocyte Antigen (HLA), called human Major Histocompatibility Complex (MHC), performs the crucial function of antigen presentation in human immunity, and correctly matched HLA antigens improves survival and reduces immunological complications. ...

      Human Leukocyte Antigen (HLA), called human Major Histocompatibility Complex (MHC), performs the crucial function of antigen presentation in human immunity, and correctly matched HLA antigens improves survival and reduces immunological complications. Therefore, a precise HLA typing method is necessary for successful transplantation between donor and recipient. Until now, many methods have been developed for HLA typing, including serological and DNA-based methods. However, these previous methods have been somewhat limited due to their requirements for a large number of samples and complex experimental procedures. To resolve this problem, in this study, we developed rapid genotyping methods for HLA-C using an oligonucleotide microarray. To evaluate the performance of the HLA-C genotyping microarray, we analyzed 50 unrelated Korean individuals. The genotyping results obtained by the oligonucleotide microarray were identical with those of PCR-SBT and PCR-SSPs, at a low-resolution, 2-digit level. Therefore, this microarray method for genotyping HLA constitutes a rapid, simultaneous, and high-throughput method that can be used as an alternative to current methods.

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      참고문헌 (Reference)

      1 van der Vlies, S.A, "reliable and efficient high resolution typing method for HLA-C using sequence-based typing" 52 : 558-568, 1998

      2 Lu, Y.H, "Use of glycerol for enhanced efficiency and specificity of PCR amplification" 9 : 297-, 1993

      3 Alvarez, I, "The rheumatoid arthritis-associated allele HLA-DR10 (DRB1*1001) shares part of its repertoire with HLA-DR1 (DRB1*0101) and HLA-DR4 (DRB*0401)" 58 : 1630-1639, 2008

      4 Reynaldo, L.P, "The kinetics of oligonucleotide replacements" 297 : 511-520, 2000

      5 Robinson, J, "The IMGT/HLA database. Nucleic Acids Res" 39 : D1171-D1176, 2011

      6 Lim, Y.S, "Susceptibility to type 1 autoimmune hepatitis is associated with shared amino acid sequences at positions 70-74 of the HLA-DRB1 molecule" 48 : 133-139, 2008

      7 Shchepinov, M.S, "Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays" 25 : 1155-1161, 1997

      8 Levine, J.E, "SSOP typing of the Tenth International Histocompatibility Workshop reference cell lines for HLA-C alleles" 174-183, 1994

      9 Hollenbach, J.A, "Report from the killer immunoglobulin- like receptor (KIR) anthropology component of the 15th International Histocompatibility Workshop: worldwide variation in the KIR loci and further evidence for the co-evolution of KIR and HLA" 9-17,

      10 Schena, M, "Quantitative monitoring of gene expression patterns with a complementary DNA microarray" 270 : 467-470, 1995

      1 van der Vlies, S.A, "reliable and efficient high resolution typing method for HLA-C using sequence-based typing" 52 : 558-568, 1998

      2 Lu, Y.H, "Use of glycerol for enhanced efficiency and specificity of PCR amplification" 9 : 297-, 1993

      3 Alvarez, I, "The rheumatoid arthritis-associated allele HLA-DR10 (DRB1*1001) shares part of its repertoire with HLA-DR1 (DRB1*0101) and HLA-DR4 (DRB*0401)" 58 : 1630-1639, 2008

      4 Reynaldo, L.P, "The kinetics of oligonucleotide replacements" 297 : 511-520, 2000

      5 Robinson, J, "The IMGT/HLA database. Nucleic Acids Res" 39 : D1171-D1176, 2011

      6 Lim, Y.S, "Susceptibility to type 1 autoimmune hepatitis is associated with shared amino acid sequences at positions 70-74 of the HLA-DRB1 molecule" 48 : 133-139, 2008

      7 Shchepinov, M.S, "Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays" 25 : 1155-1161, 1997

      8 Levine, J.E, "SSOP typing of the Tenth International Histocompatibility Workshop reference cell lines for HLA-C alleles" 174-183, 1994

      9 Hollenbach, J.A, "Report from the killer immunoglobulin- like receptor (KIR) anthropology component of the 15th International Histocompatibility Workshop: worldwide variation in the KIR loci and further evidence for the co-evolution of KIR and HLA" 9-17,

      10 Schena, M, "Quantitative monitoring of gene expression patterns with a complementary DNA microarray" 270 : 467-470, 1995

      11 Jiao, Y.L, "Polymorphisms of KIRs gene and HLA-C alleles in patients with ankylosing spondylitis: possible association with susceptibility to the disease" 28 : 343-349, 2008

      12 Zhang, F, "Oligonucleotide microarray for HLADRB1 genotyping: preparation and clinical evaluation" 65 : 467-473, 2005

      13 Guo, Z., "Oligonucleotide arrays for high-throughput SNPs detection in the MHC class I genes: HLA-B as a model system" 12 : 447-457, 2002

      14 Schulman, L.L, "Mismatches at the HLA-DR and HLA-B loci are risk factors for acute rejection after lung transplantation" 157 : 1833-1837, 1998

      15 Terasaki, P.I, "Microdroplet assay of human serum cytotoxins" 204 : 998-1000, 1964

      16 Morishima, Y, "Low incidence of acute GVHD in patients transplanted with marrow from HLA-A,B, DR-compatible unrelated donors among Japanese" 15 : 235-239, 1995

      17 Moya-Quiles, M.R, "Impact of HLA-C on acute rejection in liver transplantation" 1892-1893, 2003

      18 Flomenberg, N, "Impact of HLA class I and class II high-resolution matching on outcomes of unrelated donor bone marrow transplantation: HLA-C mismatching is associated with a strong adverse effect on transplantation outcome" 104 : 1923-1930, 2004

      19 Hirsch, D, "Immunogenetics of HLA class II in Israeli patients with adult-onset type 1 diabetes mellitus" 68 : 616-622, 2007

      20 Bunce, M, "High resolution HLA-C typing by PCR-SSP: identification of allelic frequencies and linkage disequilibria in 604 unrelated random UK Caucasoids and a comparison with serology" 50 : 100-111, 1997

      21 Davidson, J.A, "HLA-DR15, reduced relapse rate and improved survival after HLA identical sibling hemopoietic stem cell transplantation" 13 : 493-494, 2007

      22 Woolfrey, A, "HLA-C antigen mismatch is associated with worse outcome in unrelated donor peripheral blood stem cell transplantation" 17 : 885-892, 2011

      23 Montserrat, V, "HLA-B*2704, an allotype associated with ankylosing spondylitis, is critically dependent on transporter associated with antigen processing and relatively independent of tapasin and immunoproteasome for maturation, surface expression, and T cell recognition: relationship to B*2705 and B*2706" 177 : 7015-7023, 2006

      24 Lee, I, "Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray" 32 : 681-690, 2004

      25 Okumura, H, "Graft rejection and hyperacute graft-versus-host disease in stem cell transplantation from non-inherited maternal-antigen-complementary HLA-mismatched siblings" 78 : 157-160, 2007

      26 Koeleman, B.P, "Genotype effects and epistasis in type 1 diabetes and HLA-DQ trans dimer associations with disease" 5 : 381-388, 2004

      27 Rowe, J.M, "Genetically haploidentical stem cell transplantation for acute leukemia" 27 : 669-676, 2001

      28 Sarkar, G, "Formamide can dramatically improve the specificity of PCR" 18 : 7465-, 1990

      29 Persijn, G.G, "Effect of HLA-A and HLA-B matching on survival of grafts and recipients after renal transplantation" 307 : 905-908, 1982

      30 Casamitjana, N, "Development of a new HLADRB real-time PCR typing method" 66 : 85-91, 2005

      31 Lee, K.R, "Development and clinical evaluation of a microarray for HLA-A and -DRB1 genotyping" 72 : 568-577, 2008

      32 Koskinen, L, "Cost-effective HLA typing with tagging SNPs predicts celiac disease risk haplotypes in the Finnish, Hungarian, and Italian populations" 61 : 247-256, 2009

      33 Davidson, W.F, "Comparison of HLA class I gene sequences. Derivation of locus-specific oligonucleotide probes specific for HLAA, HLA-B, and HLA-C genes" 260 : 13414-13423, 1985

      34 Sun, Y, "Colburn, N.H. PCR-direct sequencing of a GC-rich region by inclusion of 10% DMSO: application to mouse c-jun" 15 : 372-374, 1993

      35 Henke, W, "Betaine improves the PCR amplification of GC-rich DNA sequences" 25 : 3957-3958, 1997

      36 Sanfilippo, F, "Benefits of HLA-A and HLA-B matching on graft and patient outcome after cadavericdonor renal transplantation" 311 : 358-364, 1984

      37 Petersdorf, E.W, "Association of HLA-C disparity with graft failure after marrow transplantation from unrelated donors" 89 : 1818-1823, 1997

      38 Jiang, B, "Application of HLA-DRB1 genotyping by oligonucleotide micro-array technology in forensic medicine" 162 : 66-73, 2006

      39 Goldberg, A.C, "Analysis of HLA haplotypes in autoimmune hepatitis type 1: identifying the major susceptibility locus" 62 : 165-169, 2001

      40 Lee, K.W, "Allelic and haplotypic diversity of HLA-A, -B, -C, -DRB1, and -DQB1 genes in the Korean population" BLACKWELL PUBLISHING 65 : 437-447, 2005

      41 정혜윤, "Allelic and Haplotypic Diversity of HLA-A, -B, -C, and -DRB1 Genes in Koreans Defined by High-resolution DNA Typing" 대한진단검사의학회 30 (30): 685-696, 2010

      42 Lorentzen, D.F, "A 25% error rate in serologic typing of HLA-B homozygotes" 50 : 359-365, 1997

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      연월일 이력구분 이력상세 등재구분
      학술지등록 한글명 : BioChip Journal
      외국어명 : BioChip Journal
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2013-10-01 평가 등재학술지 선정 (기타) KCI등재
      2011-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2009-01-01 평가 SCIE 등재 (신규평가) KCI등재후보
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      학술지 인용정보

      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 1.33 0.25 0.88
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.66 0.53 0.255 0.1
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