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      KCI등재 SCI SCIE SCOPUS

      Fine-Scale Spatial Prediction on the Risk of Plasmodium vivax Infection in the Republic of Korea

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      https://www.riss.kr/link?id=A109818265

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      다국어 초록 (Multilingual Abstract) kakao i 다국어 번역

      Background: Malaria elimination strategies in the Republic of Korea (ROK) have decreased malaria incidence but face challenges due to delayed case detection and response. To improve this, machine learning models for predicting malaria, focusing on high-risk areas, have been developed.
      Methods: The study targeted the northern region of ROK, near the demilitarized zone, using a 1-km grid to identify areas for prediction. Grid cells without residential buildings were excluded, leaving 8,425 cells. The prediction was based on whether at least one malaria case was reported in each grid cell per month, using spatial data of patient locations. Four algorithms were used: gradient boosted (GBM), generalized linear (GLM), extreme gradient boosted (XGB), and ensemble models, incorporating environmental, sociodemographic, and meteorological data as predictors. The models were trained with data from May to October (2019–2021) and tested with data from May to October 2022. Model performance was evaluated using the area under the receiver operating characteristic curve (AUROC).
      Results: The AUROC of the prediction models performed excellently (GBM = 0.9243, GLM = 0.9060, XGB = 0.9180, and ensemble model = 0.9301). Previous malaria risk, population size, and meteorological factors influenced the model most in GBM and XGB.
      Conclusion: Machine-learning models with properly preprocessed malaria case data can provide reliable predictions. Additional predictors, such as mosquito density, should be included in future studies to improve the performance of models.
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      Background: Malaria elimination strategies in the Republic of Korea (ROK) have decreased malaria incidence but face challenges due to delayed case detection and response. To improve this, machine learning models for predicting malaria, focusing on hig...

      Background: Malaria elimination strategies in the Republic of Korea (ROK) have decreased malaria incidence but face challenges due to delayed case detection and response. To improve this, machine learning models for predicting malaria, focusing on high-risk areas, have been developed.
      Methods: The study targeted the northern region of ROK, near the demilitarized zone, using a 1-km grid to identify areas for prediction. Grid cells without residential buildings were excluded, leaving 8,425 cells. The prediction was based on whether at least one malaria case was reported in each grid cell per month, using spatial data of patient locations. Four algorithms were used: gradient boosted (GBM), generalized linear (GLM), extreme gradient boosted (XGB), and ensemble models, incorporating environmental, sociodemographic, and meteorological data as predictors. The models were trained with data from May to October (2019–2021) and tested with data from May to October 2022. Model performance was evaluated using the area under the receiver operating characteristic curve (AUROC).
      Results: The AUROC of the prediction models performed excellently (GBM = 0.9243, GLM = 0.9060, XGB = 0.9180, and ensemble model = 0.9301). Previous malaria risk, population size, and meteorological factors influenced the model most in GBM and XGB.
      Conclusion: Machine-learning models with properly preprocessed malaria case data can provide reliable predictions. Additional predictors, such as mosquito density, should be included in future studies to improve the performance of models.

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      참고문헌 (Reference)

      1 Chen T, "Xgboost : Extreme Gradient Boosting" R Foundation for Statistical Computing 2022

      2 Foley DH, "Validation of ecological niche models for potential malaria vectors in the Republic of Korea" 26 (26): 210-213, 2010

      3 Janko MM, "The links between agriculture, Anopheles mosquitoes, and malaria risk in children younger than 5 years in the Democratic Republic of the Congo : a population-based, cross-sectional, spatial study" 2 (2): e74-e82, 2018

      4 이한일, "Studies on Anopheles sinensis, the vector species of vivax malaria in Korea" 43 (43): 75-92, 2005

      5 Caha J, "SpatialKDE: Kernel Density Estimation for Spatial Data (Version 0.8.2)" R Foundation for Statistical Computing 2022

      6 Haque U, "Spatial prediction of malaria prevalence in an endemic area of Bangladesh" 9 (9): 120-, 2010

      7 Cleary E, "Spatial prediction of malaria prevalence in Papua New Guinea : a comparison of Bayesian decision network and multivariate regression modelling approaches for improved accuracy in prevalence prediction" 20 (20): 269-, 2021

      8 Statistics Korea, "SGIS: Statistical Geographic Information Service"

      9 Ministry of the Interior and Safety (KR), "Road name address"

      10 한은택 ; 이덕형 ; 박기동 ; 석은석 ; 김영수 ; TsuboiTakafumi ; 신은희, "Reemerging vivax malaria : changing patterns of annual incidence and control programs in the Republic of Korea" 44 (44): 285-294, 2006

      1 Chen T, "Xgboost : Extreme Gradient Boosting" R Foundation for Statistical Computing 2022

      2 Foley DH, "Validation of ecological niche models for potential malaria vectors in the Republic of Korea" 26 (26): 210-213, 2010

      3 Janko MM, "The links between agriculture, Anopheles mosquitoes, and malaria risk in children younger than 5 years in the Democratic Republic of the Congo : a population-based, cross-sectional, spatial study" 2 (2): e74-e82, 2018

      4 이한일, "Studies on Anopheles sinensis, the vector species of vivax malaria in Korea" 43 (43): 75-92, 2005

      5 Caha J, "SpatialKDE: Kernel Density Estimation for Spatial Data (Version 0.8.2)" R Foundation for Statistical Computing 2022

      6 Haque U, "Spatial prediction of malaria prevalence in an endemic area of Bangladesh" 9 (9): 120-, 2010

      7 Cleary E, "Spatial prediction of malaria prevalence in Papua New Guinea : a comparison of Bayesian decision network and multivariate regression modelling approaches for improved accuracy in prevalence prediction" 20 (20): 269-, 2021

      8 Statistics Korea, "SGIS: Statistical Geographic Information Service"

      9 Ministry of the Interior and Safety (KR), "Road name address"

      10 한은택 ; 이덕형 ; 박기동 ; 석은석 ; 김영수 ; TsuboiTakafumi ; 신은희, "Reemerging vivax malaria : changing patterns of annual incidence and control programs in the Republic of Korea" 44 (44): 285-294, 2006

      11 Nkiruka O, "Prediction of malaria incidence using climate variability and machine learning" 22 : 100508-, 2021

      12 Hijmans RJ, "Package ‘raster’. R Package"

      13 Ribeiro PJ Jr, "Package ‘geoR’"

      14 Ridgeway G, "Package ‘gbm’"

      15 Rembold CM, "Number needed to screen : development of a statistic for disease screening" 317 (317): 307-312, 1998

      16 Han B, "Monitoring of malaria vector mosquitoes and Plasmodium vivax infection in the Republic of Korea, 2020" 15 (15): 1131-1141, 2022

      17 Kim Y, "Malaria predictions based on seasonal climate forecasts in South Africa : a time series distributed lag nonlinear model" 9 (9): 17882-, 2019

      18 Kim HC, "Malaria in the Republic of Korea, 1993-2007. Variables related to re-emergence and persistence of Plasmodium vivax among Korean populations and U. S. forces in Korea" 174 (174): 762-769, 2009

      19 Busetto L, "MODIStsp : an R package for automatic preprocessing of MODIS Land Products time series" 97 : 40-48, 2016

      20 National Aeronautics and Space Administration (NASA), "MODIS: Moderate Resolution Imaging Spectroradiometer"

      21 Hart T, "Kernel density estimation and hotspot mapping : examining the influence of interpolation method, grid cell size, and bandwidth on crime forecasting" 37 (37): 305-323, 2014

      22 Korea Meteorological Administration (KMA), "KMA weather data service"

      23 Jarvis A, "Hole-filled SRTM for the globe Version 4"

      24 Chai Jong-Yil, "History and current status of malaria in Korea" 52 (52): 441-452, 2020

      25 Banerjee S, "Hierarchical Modeling and Analysis for Spatial Data" Chapman & Hall/CRC 2003

      26 World Health Organization(WHO), "Global Technical Strategy for Malaria, 2016–2030, 2021 Update" WHO 2021

      27 Li W, "Gene expression value prediction based on XGBoost algorithm" 10 : 1077-, 2019

      28 Shah HA, "Exploring agricultural land-use and childhood malaria associations in sub-Saharan Africa" 12 (12): 4124-, 2022

      29 Fu C, "Experiences from developing and upgrading a web-based surveillance system for malaria elimination in Cambodia" 3 (3): e30-, 2017

      30 Kim YM, "Estimated effect of climatic variables on the transmission of Plasmodium vivax malaria in the Republic of Korea" 120 (120): 1314-1319, 2012

      31 Jeon B, "Epidemiological characteristics of malaria patients in 2018" 12 (12): 599-605, 2019

      32 Korea Disease Control and Prevention Agency (KDCA), "Epidemiological Investigation of Malaria"

      33 National Aeronautics and Space Administration (NASA), "Earth Observatory"

      34 Im JH, "Current status and a perspective of mosquito-borne diseases in the Republic of Korea" 21 (21): 69-77, 2021

      35 Saldanha R, "Contributing to elimination of cross-border malaria through a standardized solution for case surveillance, data sharing, and data interpretation : development of a cross-border monitoring system" 6 (6): e15409-, 2020

      36 Kan H, "Characteristics of reported malaria cases, 2020" 14 (14): 1023-1035, 2021

      37 Linthicum KJ, "Association of temperature and historical dynamics of malaria in the Republic of Korea, including reemergence in 1993" 179 (179): 806-814, 2014

      38 Bahk Young Yil ; 조신형 ; 김경남 ; 신은희 ; 전병학 ; 김정현 ; 박숙경 ; 권정란 ; 간혜수 ; 김미영 ; 김동수, "An epidemiological analysis of 28 vivax malaria cases in Gimpo-si, Korea, 2020" 59 (59): 507-512, 2021

      39 Elith J, "A working guide to boosted regression trees" 77 (77): 802-813, 2008

      40 Donnelly B, "A systematic, realist review of zooprophylaxis for malaria control" 14 (14): 313-, 2015

      41 Zinszer K, "A scoping review of malaria forecasting : past work and future directions" 2 (2): e001992-, 2012

      42 Wang M, "A novel model for malaria prediction based on ensemble algorithms" 14 (14): e0226910-, 2019

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