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      Complete mitochondrial genome of Nyctalus aviator and phylogenetic analysis of the family Vespertilionidae

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      https://www.riss.kr/link?id=A106337540

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      다국어 초록 (Multilingual Abstract)

      Bats influence overall ecosystem health by regulating species diversity and being a major source of zoonotic viruses. Hence, there is a need to elucidate their migration, population structure, and phylogenetic relationship. The complete mitochondrial genome is widely used for studying the genome-level characteristics and phylogenetic relationship of various animals due to its high mutation rate, simple structure, and maternal inheritance. In this study, we determined the complete mitogenome sequence of the bird-like noctule (Nyctalus aviator) by Illumina next-generation sequencing. The sequences obtained were used to reconstruct a phylogenic tree of Vespertilionidae to elucidate the phylogenetic relationship among its members. The mitogenome of N. aviator is 16,863-bp long with a typical vertebrate gene arrangement, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 putative control region. Overall, the nucleotide composition is as follows: 32.3% A, 24.2% C, 14.3% G, and 29.2% T, with a slight AT bias (61.5%). The base composition of the 13 PCGs is as follows: 30.3% A, 13.4% G, 31.0% T, and 25.2% C. The phylogenetic analysis, based on 13 concatenated PCG sequences, infers that N. aviator is closely related to N. noctula with a high bootstrap value (100%).
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      Bats influence overall ecosystem health by regulating species diversity and being a major source of zoonotic viruses. Hence, there is a need to elucidate their migration, population structure, and phylogenetic relationship. The complete mitochondrial ...

      Bats influence overall ecosystem health by regulating species diversity and being a major source of zoonotic viruses. Hence, there is a need to elucidate their migration, population structure, and phylogenetic relationship. The complete mitochondrial genome is widely used for studying the genome-level characteristics and phylogenetic relationship of various animals due to its high mutation rate, simple structure, and maternal inheritance. In this study, we determined the complete mitogenome sequence of the bird-like noctule (Nyctalus aviator) by Illumina next-generation sequencing. The sequences obtained were used to reconstruct a phylogenic tree of Vespertilionidae to elucidate the phylogenetic relationship among its members. The mitogenome of N. aviator is 16,863-bp long with a typical vertebrate gene arrangement, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 putative control region. Overall, the nucleotide composition is as follows: 32.3% A, 24.2% C, 14.3% G, and 29.2% T, with a slight AT bias (61.5%). The base composition of the 13 PCGs is as follows: 30.3% A, 13.4% G, 31.0% T, and 25.2% C. The phylogenetic analysis, based on 13 concatenated PCG sequences, infers that N. aviator is closely related to N. noctula with a high bootstrap value (100%).

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      참고문헌 (Reference)

      1 Qian, K., "The complete mitochondrial genome of Nyctalus noctula (Chiroptera: Vespertilionidae). Mitochondrial DNA A DNA Mapp" 27 (27): 2365-2366, 2016

      2 Fukui, D., "The Wild Mammals of Japan" Shoukado Press 74-75, 2009

      3 Benson, G., "Tandem repeats finder: a program to analyze DNA sequences" 27 (27): 573-580, 1999

      4 Simmons, N.B., "Primitive Early Eocene bat from Wyoming and the evolution of flight and echolocation" 451 (451): 818-821, 2008

      5 Fenton, M.B., "Phyllostomid bats (Chiroptera: Phyllostomidae) as indicators of habitat disruption in the Neotropics" 24 (24): 440-446, 1992

      6 Tsytsulina, K., "Nyctalus aviator" 2008

      7 Botero-Castro, F., "Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)" 69 (69): 728-739, 2013

      8 O’shea, T.J., "Multiple mortality events in bats: a global review" 46 (46): 175-190, 2016

      9 Simmons, N.B., "Mammal Species of the World: A Taxonomic and Geographic Reference" Hopkins University Press 312-529, 2005

      10 Tamura, K., "MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0" 30 : 2725-2729, 2013

      1 Qian, K., "The complete mitochondrial genome of Nyctalus noctula (Chiroptera: Vespertilionidae). Mitochondrial DNA A DNA Mapp" 27 (27): 2365-2366, 2016

      2 Fukui, D., "The Wild Mammals of Japan" Shoukado Press 74-75, 2009

      3 Benson, G., "Tandem repeats finder: a program to analyze DNA sequences" 27 (27): 573-580, 1999

      4 Simmons, N.B., "Primitive Early Eocene bat from Wyoming and the evolution of flight and echolocation" 451 (451): 818-821, 2008

      5 Fenton, M.B., "Phyllostomid bats (Chiroptera: Phyllostomidae) as indicators of habitat disruption in the Neotropics" 24 (24): 440-446, 1992

      6 Tsytsulina, K., "Nyctalus aviator" 2008

      7 Botero-Castro, F., "Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)" 69 (69): 728-739, 2013

      8 O’shea, T.J., "Multiple mortality events in bats: a global review" 46 (46): 175-190, 2016

      9 Simmons, N.B., "Mammal Species of the World: A Taxonomic and Geographic Reference" Hopkins University Press 312-529, 2005

      10 Tamura, K., "MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0" 30 : 2725-2729, 2013

      11 Yu, J.N., "Genetic differentiation between collections of hatchery and wild masu salmon (Oncorhynchus masou) inferred from mitochondrial and microsatellite DNA analysis" 94 : 259-271, 2012

      12 Tillich, M., "GeSeq - versatile and accurate annotation of organelle genomes" 45 (45): W6-W11, 2017

      13 Kunz, T.H., "Ecosystem services provided by bats" 1223 (1223): 1-38, 2011

      14 Baek, S. Y., "Complete mitochondrial genomes of Carcinoscorpius rotundicauda and Tachypleus tridentatus (Xiphosura, Arthropoda) and implications for chelicerate phylogenetic studies" 10 (10): 479-489, 2014

      15 Kim, K., "Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species" 5 : 15655-, 2015

      16 Knudsen, B., "Complete DNA sequence of the mitochondrial genome of the sea-slug, Aplysia californica: conservation of the gene order in Euthyneura" 38 (38): 459-469, 2006

      17 O’shea, T.J., "Bat flight and zoonotic viruses" 20 (20): 741-745, 2014

      18 Wyman, S.K., "Automatic annotation of organellar genomes with DOGMA" 20 : 3252-3255, 2004

      19 Lobry, J.R., "Asymmetric substitution patterns in the two DNA strands of bacteria" 13 (13): 660-665, 1996

      20 Hiendleder, S., "Analysis of mitochondrial DNA indicates that domestic sheep are derived from two different ancestral maternal sources: no evidence for contributions from urial and argali sheep" 89 (89): 113-120, 1998

      21 Mayfield, J.E., "AT rich sequences in vertebrate DNA" 67 (67): 157-163, 1978

      22 Laslett, D., "ARWEN, a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences" 24 (24): 172-175, 2008

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