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      A report of 26 unrecorded bacterial species in Korea, isolated from urban streams of the Han River watershed in 2018

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      https://www.riss.kr/link?id=A106337542

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      다국어 초록 (Multilingual Abstract)

      Owing to a distinct environmental regime and anthropogenic effects, freshwater bacterial communities of urban streams are considered to be different from those of large freshwater lakes and rivers. To obtain unrecorded, freshwater bacterial species in Korea, water and sediment samples were collected from various urban streams of the Han River watershed in 2018. After plating the freshwater samples on R2A agar, approximately 1000 bacterial strains were isolated from the samples as single colonies and identified using 16S rRNA gene sequence analyses. A total of 26 strains, with >98.7% 16S rRNA gene sequence similarity with validly published bacterial species but not reported in Korea, were determined to be unrecorded bacterial species in Korea. The unrecorded bacterial strains were phylogenetically diverse and belonged to four phyla, six classes, 12 orders, 16 families, and 21 genera. At the generic level, the unreported species were assigned to Nocardioides, Streptomyces, Microbacterium, Kitasatospora, Herbiconiux, Corynebacterium, and Microbacterium of the class Actinobacteria; Paenibacillus and Bacillus of the class Bacilli; Caulobacter, Methylobacterium, Novosphingobium, and Porphyrobacter of the class Alphaproteobacteria; Aquabacterium, Comamonas, Hydrogenophaga, Laribacter, Rivicola, Polynucleobacter, and Vogesella of the class Betaproteobacteria; Arcobacter of the class Epsilonproteobacteria; and Flavobacterium of the class Flavobacteriia. The details of the 26 unreported species, including Gram reaction, colony and cell morphology, biochemical properties, and phylogenetic position are also provided in the strain descriptions.
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      Owing to a distinct environmental regime and anthropogenic effects, freshwater bacterial communities of urban streams are considered to be different from those of large freshwater lakes and rivers. To obtain unrecorded, freshwater bacterial species in...

      Owing to a distinct environmental regime and anthropogenic effects, freshwater bacterial communities of urban streams are considered to be different from those of large freshwater lakes and rivers. To obtain unrecorded, freshwater bacterial species in Korea, water and sediment samples were collected from various urban streams of the Han River watershed in 2018. After plating the freshwater samples on R2A agar, approximately 1000 bacterial strains were isolated from the samples as single colonies and identified using 16S rRNA gene sequence analyses. A total of 26 strains, with >98.7% 16S rRNA gene sequence similarity with validly published bacterial species but not reported in Korea, were determined to be unrecorded bacterial species in Korea. The unrecorded bacterial strains were phylogenetically diverse and belonged to four phyla, six classes, 12 orders, 16 families, and 21 genera. At the generic level, the unreported species were assigned to Nocardioides, Streptomyces, Microbacterium, Kitasatospora, Herbiconiux, Corynebacterium, and Microbacterium of the class Actinobacteria; Paenibacillus and Bacillus of the class Bacilli; Caulobacter, Methylobacterium, Novosphingobium, and Porphyrobacter of the class Alphaproteobacteria; Aquabacterium, Comamonas, Hydrogenophaga, Laribacter, Rivicola, Polynucleobacter, and Vogesella of the class Betaproteobacteria; Arcobacter of the class Epsilonproteobacteria; and Flavobacterium of the class Flavobacteriia. The details of the 26 unreported species, including Gram reaction, colony and cell morphology, biochemical properties, and phylogenetic position are also provided in the strain descriptions.

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      참고문헌 (Reference)

      1 Saitou, N, "The neighbor-joining method -a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      2 Kang, I., "The first complete genome sequences of the acI lineage, the most abundant freshwater Actinobacteria, obtained by whole-genome-amplification of dilution-to-extinction cultures" 7 : 42252-, 2017

      3 Neuenschwander, S. M., "Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria" 12 : 185-198, 2018

      4 Tamura, K., "MEGA6: Molecular Evolutionary Genetics Analysis version 6.0" 30 : 2725-2729, 2013

      5 Wetzel, R. G., "Limnology: lake and river ecosystems" Gulf Professional Publishing 2001

      6 Williamson, C. E., "Lakes and streams as sentinels of environmental change in terrestrial and atmospheric processes" 6 : 247-254, 2008

      7 Kim, O. S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species" 62 : 716-721, 2012

      8 김수현, "Genomic Analysis of a Freshwater Actinobacterium, “Candidatus Limnosphaera aquatica” Strain IMCC26207, Isolated from Lake Soyang" 한국미생물·생명공학회 27 (27): 825-833, 2017

      9 Yang, S.-J, "Gaetbulibacter marinus sp. nov., isolated from coastal seawater, and emended description of the genus Gaetbulibacter" 58 : 315-318, 2008

      10 Jeon, Y. S., "EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes" 64 : 689-691, 2014

      1 Saitou, N, "The neighbor-joining method -a new method for reconstructing phylogenetic trees" 4 : 406-425, 1987

      2 Kang, I., "The first complete genome sequences of the acI lineage, the most abundant freshwater Actinobacteria, obtained by whole-genome-amplification of dilution-to-extinction cultures" 7 : 42252-, 2017

      3 Neuenschwander, S. M., "Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria" 12 : 185-198, 2018

      4 Tamura, K., "MEGA6: Molecular Evolutionary Genetics Analysis version 6.0" 30 : 2725-2729, 2013

      5 Wetzel, R. G., "Limnology: lake and river ecosystems" Gulf Professional Publishing 2001

      6 Williamson, C. E., "Lakes and streams as sentinels of environmental change in terrestrial and atmospheric processes" 6 : 247-254, 2008

      7 Kim, O. S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species" 62 : 716-721, 2012

      8 김수현, "Genomic Analysis of a Freshwater Actinobacterium, “Candidatus Limnosphaera aquatica” Strain IMCC26207, Isolated from Lake Soyang" 한국미생물·생명공학회 27 (27): 825-833, 2017

      9 Yang, S.-J, "Gaetbulibacter marinus sp. nov., isolated from coastal seawater, and emended description of the genus Gaetbulibacter" 58 : 315-318, 2008

      10 Jeon, Y. S., "EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes" 64 : 689-691, 2014

      11 Felsenstein, J, "Confidence limits on phylogenies: an approach using the bootstrap" 39 : 783-791, 1985

      12 전형태, "A report on 17 unrecorded bacterial species in Korea isolated from Lakes Soyang and Chungju in 2016" 국립생물자원관 6 (6): 163-170, 2017

      13 정요찬, "A report of 22 unrecorded bacterial species in Korea, isolated from the North Han River basin in 2017" 국립생물자원관 7 (7): 193-201, 2018

      14 Newton, R. J., "A guide to the natural history of freshwater lake bacteria" 75 : 14-49, 2011

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2028 평가예정 재인증평가 신청대상 (재인증)
      2022-01-01 평가 등재학술지 유지 (재인증) KCI등재
      2019-01-01 평가 등재학술지 선정 (계속평가) KCI등재
      2018-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2017-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2015-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0 0 0
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