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      Novosphingobium sp. PP1Y as a novel source of outer membrane vesicles

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      https://www.riss.kr/link?id=A106225833

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      다국어 초록 (Multilingual Abstract)

      Outer membrane vesicles (OMVs) are nanostructures of 20– 200 nm diameter deriving from the surface of several Gramnegative bacteria. OMVs are emerging as shuttles involved in several mechanisms of communication and environmental adaptation. In this ...

      Outer membrane vesicles (OMVs) are nanostructures of 20– 200 nm diameter deriving from the surface of several Gramnegative bacteria. OMVs are emerging as shuttles involved in several mechanisms of communication and environmental adaptation. In this work, OMVs were isolated and characterized from Novosphingobium sp. PP1Y, a Gram-negative non-pathogenic microorganism lacking LPS on the outer membrane surface and whose genome was sequenced and annotated. Scanning electron microscopy performed on samples obtained from a culture in minimal medium highlighted the presence of PP1Y cells embedded in an extracellular matrix rich in vesicular structures. OMVs were collected from the exhausted growth medium during the mid-exponential phase, and purified by ultracentrifugation on a sucrose gradient. Atomic force microscopy, dynamic light scattering and nanoparticle tracking analysis showed that purified PP1Y OMVs had a spherical morphology with a diameter of ca. 150 nm and were homogenous in size and shape. Moreover, proteomic and fatty acid analysis of purified OMVs revealed a specific biochemical “fingerprint”, suggesting interesting details concerning their biogenesis and physiological role. Moreover, these extracellular nanostructures do not appear to be cytotoxic on HaCaT cell line, thus paving the way to their future use as novel drug delivery systems.

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      참고문헌 (Reference)

      1 Izzo, V., "a-Rhamnosidase activity in the marine isolate Novosphingobium sp, PP1Y and its use in the bioconversion of flavonoids" 105 : 95-103, 2014

      2 Notomista, E., "The marine isolate Novosphingobium sp, PP1Y shows specific adaptation to use the aromatic fraction of fuels as the sole carbon and energy source" 61 : 582-594, 2011

      3 Altenburger, R., "The human keratinocytes cell line HaCaT : An in vitro cell culture model for keratinocyte testosterone metabolism" 16 : 766-, 1999

      4 Coppotelli, B. M., "Study of the degradation activity and the strategies to promote the bioavailability of phenanthrene by Sphingomonas paucimobilis strain 20006FA" 59 : 266-276, 2010

      5 Mensitieri, F., "Structural and functional insights into RHA-P, a bacterial GH106 α-L-rhamnosidase from Novosphingobium sp. PP1Y" 648 : 1–L–11-, 2018

      6 Bacia, K., "Sterol structure determines the separation of phases and the curvature of the liquid-ordered phase in model membranes" 102 : 3272-3277, 2005

      7 Mashburn-Warren, L. M., "Special delivery : vesicle trafficking in prokaryotes" 61 : 839-846, 2006

      8 Beate, V., "Size and concentration analyses of extracellular vesicles by nano-particle tracking analysis : a variation study" 6 : 1344087-, 2017

      9 McBroom, A. J., "Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response" 63 : 545-558, 2007

      10 Hellman, J., "Release of Gram-negative outer-membrane proteins into human serum and septic rat blood and their interactions with immunoglobulin in antiserum to Escherichia coli J5" 181 : 1034-1043, 2000

      1 Izzo, V., "a-Rhamnosidase activity in the marine isolate Novosphingobium sp, PP1Y and its use in the bioconversion of flavonoids" 105 : 95-103, 2014

      2 Notomista, E., "The marine isolate Novosphingobium sp, PP1Y shows specific adaptation to use the aromatic fraction of fuels as the sole carbon and energy source" 61 : 582-594, 2011

      3 Altenburger, R., "The human keratinocytes cell line HaCaT : An in vitro cell culture model for keratinocyte testosterone metabolism" 16 : 766-, 1999

      4 Coppotelli, B. M., "Study of the degradation activity and the strategies to promote the bioavailability of phenanthrene by Sphingomonas paucimobilis strain 20006FA" 59 : 266-276, 2010

      5 Mensitieri, F., "Structural and functional insights into RHA-P, a bacterial GH106 α-L-rhamnosidase from Novosphingobium sp. PP1Y" 648 : 1–L–11-, 2018

      6 Bacia, K., "Sterol structure determines the separation of phases and the curvature of the liquid-ordered phase in model membranes" 102 : 3272-3277, 2005

      7 Mashburn-Warren, L. M., "Special delivery : vesicle trafficking in prokaryotes" 61 : 839-846, 2006

      8 Beate, V., "Size and concentration analyses of extracellular vesicles by nano-particle tracking analysis : a variation study" 6 : 1344087-, 2017

      9 McBroom, A. J., "Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response" 63 : 545-558, 2007

      10 Hellman, J., "Release of Gram-negative outer-membrane proteins into human serum and septic rat blood and their interactions with immunoglobulin in antiserum to Escherichia coli J5" 181 : 1034-1043, 2000

      11 De Lise, F., "RHA-P : isolation, expression and characterization of a novel α-L-rhamnosidase from Novosphingobium sp. PP1Y" 134 : 136-147, 2016

      12 Bauman, S. J., "Purification of outer membrane vesicles from Pseudomonas aeruginosa and their activation of an IL-8 response" 8 : 2400-2408, 2006

      13 윤성호, "Proteomic characterization of the outer membrane vesicle of the halophilic marine bacterium Novosphingobium pentaromativorans US6-1" 한국미생물학회 55 (55): 56-62, 2017

      14 Choi, C. W., "Proteomic characterization of the outer membrane vesicle of Pseudomonas putida KT2440" 13 : 4298-4309, 2014

      15 Eddy, J. L., "Production of outer membrane vesicles by the plague pathogen Yersinia pestis" 9 : e107002-, 2014

      16 Pollock, T. J., "Planktonic/sessile dimorphism of polysaccharide-encapsulated sphingomonads" 23 : 436-441, 1999

      17 Schwechheimer, C., "Outer-membrane vesicles from Gram-negative bacteria : biogenesis and functions" 13 : 605-619, 2015

      18 Yonezawa, H., "Outer membrane vesicles of Helicobacter pylori TK1402 are involved in biofilm formation" 9 : 197-, 2009

      19 Zhou, L., "On the origin of membrane vesicles in Gram-negative bacteria" 163 : 223-228, 1998

      20 Pérez-Cruz, C., "New type of outer membrane vesicle produced by the Gram-negative bacterium Shewanella vesiculosa M7T : Implications for DNA content" 79 : 1874-1881, 2013

      21 De Castro, C., "Microbe-associated molecular patterns in innate immunity : Extraction and chemical analysis of Gram-negative bacterial lipopolysaccharides" 480 : 89-115, 2010

      22 Klimentova, J., "Methods of isolation and purification of outer membrane vesicles from Gram-negative bacteria" 170 : 1-9, 2015

      23 Frias, A., "Membrane vesicles : a common feature in the extracellular matter of cold-adapted antarctic bacteria" 59 : 476-486, 2010

      24 Monti, M. C., "Mechanistic insights on petrosaspongiolide M inhibitory effects on immunoproteasome and autophagy" 1844 : 713-721, 2014

      25 Kim, G. H., "Isolation and proteomic characterization of bacterial extracellular membrane vesicles" 15 : 719-731, 2014

      26 Gilewicz, M., "Isolation and characterization of a marine bacterium capable of utilizing 2-methylphenanthrene" 48 : 528-533, 1997

      27 Schooling, S. R., "Interactions of DNA with biofilm-derived membrane vesicles" 13 : 4097-4102, 2009

      28 Mashburn-Warren, L., "Interaction of quorum signals with outer membrane lipids : insights into prokaryotic membrane vesicle formation" 69 : 491-502, 2008

      29 Mashburn-Warren, L., "Gram-negative outer membrane vesicles : beyond the cell surface" 6 : 214-219, 2008

      30 Li, Z., "Gram-negative bacteria produce membrane vesicles which are capable of killing other bacteria" 20 : 5478-5483, 1998

      31 Lee, E. Y., "Global proteomic profiling of native outer membrane vesicles derived from Escherichia coli" 7 : 3143-3153, 2007

      32 DellaGreca, M., "Fatty acids released by Chlorella vulgaris and their role in interference with Pseudokirchneriella subcapitata : Experiments and modelling" 36 : 339-349, 2010

      33 Hbb, R. I., "Evaluation of procedures for outer membrane isolation from Campylobacter jejuni" 155 : 979-988, 2009

      34 Johnsen, A. R., "Evaluation of bacterial strategies to promote the bioavailability of polycyclic aromatic hydrocarbons" 63 : 452-459, 2004

      35 Schwechheimer, C., "Envelope control of outer membrane vesicle production in Gram-negative bacteria" 52 : 3031-3040, 2013

      36 Denich, T. J., "Effect of selected environmental and physicochemical factors on bacterial cytoplasmic membranes" 52 : 149-182, 2003

      37 Grande, R., "Detection and physicochemical characterization of membrane vesicles(MVs)of Lactobacillus reuteri DSM 17938" 8 : 1040-, 2017

      38 Mansilla, M. C., "Control of membrane lipid fluidity by molecular thermosensors" 186 : 6681-6688, 2004

      39 Manning, S. J., "Contribution of bacterial outer membrane vesicles to innate bacterial defense" 11 : 258-, 2011

      40 D’Argenio, V., "Complete sequencing of Novosphingobium sp, PP1Y reveals a biotechnologically meaningful metabolic pattern" 15 : 384-397, 2014

      41 Maneerat, S, "Biosurfactants from marine microorganisms" 27 : 1263-1272, 2005

      42 Kulp, A., "Biological functions and biogenesis of secreted bacterial outer membrane vesicles" 64 : 163-184, 2010

      43 Heramb, M. K., "Biogenesis and multifaceted roles of outer membrane vesicles from Gram-negative bacteria" 160 : 2109-2121, 2014

      44 Gujrati, V., "Bioengineered bacterial outer membrane vesicles as cell-specific drug-delivery vehicles for cancer therapy" 8 : 1525-1537, 2014

      45 Biller, S. J., "Bacterial vesicles in marine ecosystems" 343 : 183-186, 2014

      46 Allison, D. P., "Atomic force microscopy of biological samples" 2 : 618-634, 2010

      47 Roier, S., "A novel mechanism for the biogenesis of outer membrane vesicles in Gram-negative bacteria" 7 : 10515-, 2016

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