1 Lozupone, C., "UniFrac : a new phylogenetic method for comparing microbial communities" 71 : 8228-8235, 2005
2 Francis, C. A., "Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean" 102 : 14683-14688, 2005
3 Edger, R. C., "UPARSE : highly accurate OTU sequences from microbial amplicon reads" 10 : 996-998, 2013
4 Edgar, R. C., "UCHIME improves sensitivity and speed of chimera detection" 27 : 2194-2200, 2011
5 Bolger, A. M., "Trimmomatic : a flexible trimmer for Illumina sequence data" 30 : 2114-2120, 2014
6 Fierer, N., "The biogeography of ammonia-oxidizing bacterial communities in soil" 58 : 435-445, 2009
7 Rotthauwe, J. H., "The ammonia monooxygenase structural gene amoA as a functional marker : molecular fine-scale analysis of natural ammonia-oxidizing populations" 63 : 4704-4712, 1997
8 Dang, H., "Thaumarchaeotal signature gene distribution in sediments of the northern South China Sea: an indicator of the metabolic intersection of the marine carbon, nitrogen, and phosphorus cycles?" 79 : 2137-2147, 2013
9 Stewart, B. M., "Systematic salt effects in the automated determination of nutrients in seawater" 30 : 869-874, 1996
10 Zhou, L., "Species, abundance and function of ammonia-oxidizing archaea in inland waters across China" 5 : 15969-, 2015
1 Lozupone, C., "UniFrac : a new phylogenetic method for comparing microbial communities" 71 : 8228-8235, 2005
2 Francis, C. A., "Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean" 102 : 14683-14688, 2005
3 Edger, R. C., "UPARSE : highly accurate OTU sequences from microbial amplicon reads" 10 : 996-998, 2013
4 Edgar, R. C., "UCHIME improves sensitivity and speed of chimera detection" 27 : 2194-2200, 2011
5 Bolger, A. M., "Trimmomatic : a flexible trimmer for Illumina sequence data" 30 : 2114-2120, 2014
6 Fierer, N., "The biogeography of ammonia-oxidizing bacterial communities in soil" 58 : 435-445, 2009
7 Rotthauwe, J. H., "The ammonia monooxygenase structural gene amoA as a functional marker : molecular fine-scale analysis of natural ammonia-oxidizing populations" 63 : 4704-4712, 1997
8 Dang, H., "Thaumarchaeotal signature gene distribution in sediments of the northern South China Sea: an indicator of the metabolic intersection of the marine carbon, nitrogen, and phosphorus cycles?" 79 : 2137-2147, 2013
9 Stewart, B. M., "Systematic salt effects in the automated determination of nutrients in seawater" 30 : 869-874, 1996
10 Zhou, L., "Species, abundance and function of ammonia-oxidizing archaea in inland waters across China" 5 : 15969-, 2015
11 Liu, S., "Spatial distribution and factors shaping the niche segregation of ammonia-oxidizing microorganisms in the Qiantang River" 79 : 4065-4071, 2013
12 Li, M., "Spatial distribution and abundances of ammonia-oxidizing archaea(AOA)and ammonia-oxidizing bacteria(AOB)in mangrove sediments" 89 : 1243-1254, 2011
13 Luo, Z. H., "Spatial distribution and abundance of ammonia-oxidizing microorganisms in deep-sea sediments of the Pacific Ocean" 108 : 329-342, 2015
14 Hou, J., "Shifts between ammonia-oxidizing bacteria and archaea in relation to nitrification potential across trophic gradients in two large Chinese lakes(Lake Taihu and Lake Chaohu)" 47 : 2285-2296, 2013
15 Wu, L., "Responses of active ammonia oxidizers and nitrification activity in eutrophic lake sediments to nitrogen and temperature" 85 : e00258-19, 2019
16 Mosier, A. C., "Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary" 10 : 3002-3016, 2008
17 Zhang, Y., "Population and diversity of ammonia-oxidizing archaea and bacteria in a pollutants’ receiving area in Hangzhou Bay" 100 : 6035-6045, 2016
18 Purkhold, U., "Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis : implications for molecular diversity surveys" 66 : 5368-5382, 2000
19 Cao, H., "Phylogenetic diversity and ecological pattern of ammonia-oxidizing archaea in the surface sediments of the western Pacific" 62 : 813-, 2011
20 Auguet, J. C., "Partitioning of Thaumarchaeota populations along environmental gradients in high mountain lakes" 84 : 154-164, 2013
21 Mantoura, R. F. C., "Optimization of the indophenol blue method for the automated determination of ammonia in estuarine waters" 17 : 219-224, 1983
22 Cao, H., "Microbial community changes along the active seepage site of one cold seep in the Red Sea" 6 : 739-, 2015
23 Qin, W., "Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation" 111 : 12504-12509, 2014
24 Tamura, K., "MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods" 28 : 2731-2739, 2011
25 Liu, Q., "Light and temperature control the seasonal distribution of thaumarchaeota in the South Atlantic bight" 12 : 1473-1485, 2018
26 Könneke, M., "Isolation of an autotrophic ammonia-oxidizing marine archaeon" 437 : 543-546, 2005
27 Schloss, P. D., "Introducing mothur: open-source, platformindependent, community-supported software for describing and comparing microbial communities" 75 : 7537-7541, 2009
28 Pett-Ridge, J., "Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil" 85 : 179-194, 2013
29 Amato, K. R., "Habitat degradation impacts black howler monkey(Alouatta pigra)gastrointestinal microbiomes" 7 : 1344-1353, 2013
30 Tourna, M., "Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms" 10 : 1357-1364, 2008
31 Oishi, R., "Growth of ammonia-oxidizing archaea and bacteria in cattle manure compost under various temperatures and ammonia concentrations" 63 : 787-793, 2012
32 Pereira e Silva, M. C., "Fluctuations in ammonia oxidizing communities across agricultural soils are driven by soil structure and pH" 3 : 77-, 2012
33 Magoč, T., "FLASH : fast length adjustment of short reads to improve genome assemblies" 27 : 2957-2963, 2011
34 Avrahami, S., "Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers" 5 : 691-705, 2003
35 Dang, H., "Diversity, abundance, and spatial distribution of sediment ammonia-oxidizing Betaproteobacteria in response to environmental gradients and coastal eutrophication in Jiaozhou Bay" 76 : 4691-4702, 2010
36 Chen, Y., "Diversity, abundance, and spatial distribution of ammonia-oxidizing β-proteobacteria in sediments from Changjiang Estuary and its adjacent area in East China Sea" 67 : 788-803, 2014
37 Yu, S., "Diversity, abundance, and niche differentiation of ammonia-oxidizing prokaryotes in mud deposits of the Eastern China marginal seas" 7 : 137-, 2016
38 Zheng, Y., "Diversity, abundance, and activity of ammonia-oxidizing bacteria and archaea in Chongming eastern intertidal sediments" 97 : 8351-8363, 2013
39 Beman, J. M., "Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary : Bahía del Tóbari" 72 : 7767-7777, 2006
40 Jin, T., "Diversity and quantity of ammonia-oxidizing archaea and bacteria in sediment of the Pearl River Estuary" 90 : 1137-1145, 2011
41 Cao, H., "Diversity and abundance of ammonia-oxidizing prokaryotes in sediments from the coastal Pearl River estuary to the South China Sea" 100 : 545-556, 2011
42 Jiang, H., "Diversity and abundance of ammonia-oxidizing archaea and bacteria in Qinghai Lake, northwestern China" 26 : 199-211, 2009
43 Li, M., "Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary" 8 : 1584-, 2018
44 Yu, T., "Difference of nitrogen-cycling microbes between shallow bay and deepsea sediments in the South China Sea" 102 : 447-459, 2018
45 Amin, S. A., "Copper requirements of the ammonia-oxidizing archaeon Nitrosopumilus maritimus SCM1 and implications for nitrification in the marine environment" 58 : 2037-2045, 2013
46 van Kessel, M. A. H. J., "Complete nitrification by a single microorganism" 528 : 555-559, 2015
47 Daims, H., "Complete nitrification by Nitrospira bacteria" 528 : 504-509, 2015
48 Hou, M., "Communities of sediment ammonia-oxidizing bacteria along a coastal pollution gradient in the East China Sea" 86 : 147-153, 2014
49 Wang, J., "Archaea dominate the ammonia-oxidizing community in deep-sea sediments of the eastern Indian Ocean-from the Equator to the Bay of Bengal" 8 : 415-, 2017
50 Gaudette, H. E., "An inexpensive titration method for the determination of organic carbon in recent sediments" 44 : 249-253, 1974
51 Ouyang, Y., "Ammonium availability and temperature control contributions of ammonia oxidizing bacteria and archaea to nitrification in an agricultural soil" 113 : 161-172, 2017
52 Martens-Habbena, W., "Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria" 461 : 976-979, 2009
53 Horak, R. E. A., "Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea" 7 : 2023-2033, 2013
54 Urakawa, H., "Ammonia availability shapes the seasonal distribution and activity of archaeal and bacterial ammonia oxidizers in the Puget Sound estuary" 59 : 1321-1335, 2014
55 Christman, G. D., "Abundance, diversity, and activity of ammonia-axidizing prokaryotes in the coastal Arctic Ocean in summer and winter" 77 : 2026-2034, 2011
56 Jones, R., "A new marine ammonium-oxidizing bacterium, Nitrosomonas cryotolerans sp. nov" 34 : 1122-1128, 1988
57 Soon, Y. K., "A comparison of some methods for soil organic carbon determination" 22 : 943-954, 1991