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Here we report the genome sequence of Veillonella atypica strain KHUD-V1 isolated from subgingival dental plaque of Korean chronic periodontitis patients. Unlike other V. atypica strains, KHUD-V1 carries two prophage regions and prophage remnants, as ...
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RISS 인기검색어
Genome sequence of Veillonella atypica KHUD-V1 isolated from a human subgingival dental plaque of periodontitis lesion = 사람 치주염 병소의 치은 연하 치태에서 분리된 Veillonella atypica KHUD-V1의 유전체 염기서열 해독
한글로보기https://www.riss.kr/link?id=A106195999
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저자
이재형 (경희대학교) ; 신승윤 (경희대학교) ; 이한 (경희대학교 치과대학 악안면생체공학교실) ; 양석빈 (경희대학교) ; 장은영 (경희대학교) ; 류재인 (경희대학교 치과대학 예방사회치과학 교실) ; 이진용 (경희대학교) ; 문지회 (경희대학교) ; Lee, Jae-Hyung ; Shin, Seung-Yun ; Lee, Han ; Yang, Seok Bin ; Jang, Eun-Young ; Ryu, Jae-In ; Lee, Jin-Yong ; Moon, Ji-Hoi
- 발행기관
- 학술지명
- 권호사항
-
발행연도
2019
-
작성언어
English
- 주제어
-
등재정보
SCOPUS,KCI등재
-
자료형태
학술저널
- 발행기관 URL
-
수록면
77-79(3쪽)
-
KCI 피인용횟수
0
- DOI식별코드
- 제공처
- 소장기관
-
0
상세조회 -
0
다운로드
부가정보
다국어 초록 (Multilingual Abstract)
Here we report the genome sequence of Veillonella atypica strain KHUD-V1 isolated from subgingival dental plaque of Korean chronic periodontitis patients. Unlike other V. atypica strains, KHUD-V1 carries two prophage regions and prophage remnants, as well as several genes homologous to prophage-associated virulence factors, such as virulence-associated protein E, a Clp protease, and a toxin-antitoxin system. The isolate and its genome sequence obtained here will aid to understand the diversity of the genome architecture of Veillonella within an evolutionary framework and the role of prophages that contribute to the genetic diversity as well as the virulence of V. atypica.
Here we report the genome sequence of Veillonella atypica strain KHUD-V1 isolated from subgingival dental plaque of Korean chronic periodontitis patients. Unlike other V. atypica strains, KHUD-V1 carries two prophage regions and prophage remnants, as well as several genes homologous to prophage-associated virulence factors, such as virulence-associated protein E, a Clp protease, and a toxin-antitoxin system. The isolate and its genome sequence obtained here will aid to understand the diversity of the genome architecture of Veillonella within an evolutionary framework and the role of prophages that contribute to the genetic diversity as well as the virulence of V. atypica.
참고문헌 (Reference)
1 Bankevich A, "SPAdes : a new genome assembly algorithm and its applications to single-cell sequencing" 19 : 455-477, 2012
2 Keijser BJ, "Pyrosequencing analysis of the oral microflora of healthy adults" 87 : 1016-1020, 2008
3 Lugli GA, "Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota" 18 : 2196-2213, 2016
4 Seemann T, "Prokka : rapid prokaryotic genome annotation" 30 : 2068-2069, 2014
5 Arndt D, "PHASTER : a better, faster version of the PHAST phage search tool" 44 : W16-21, 2016
6 Zhao Y, "PGAP : pan-genomes analysis pipeline" 28 : 416-418, 2012
7 Saladi L, "Native valve endocarditis due to Veillonella species : A case report and review of the literature" 2017 : 4896186-, 2017
8 Tatusova T, "NCBI prokaryotic genome annotation pipeline" 44 : 6614-6624, 2016
9 van den Bogert B, "Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples" 77 : 2071-2080, 2011
10 Roodt Y, "Identification of prophages and prophage remnants within the genome of Avibacterium paragallinarum bacterium" 2012 : 953609-, 2012
1 Bankevich A, "SPAdes : a new genome assembly algorithm and its applications to single-cell sequencing" 19 : 455-477, 2012
2 Keijser BJ, "Pyrosequencing analysis of the oral microflora of healthy adults" 87 : 1016-1020, 2008
3 Lugli GA, "Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota" 18 : 2196-2213, 2016
4 Seemann T, "Prokka : rapid prokaryotic genome annotation" 30 : 2068-2069, 2014
5 Arndt D, "PHASTER : a better, faster version of the PHAST phage search tool" 44 : W16-21, 2016
6 Zhao Y, "PGAP : pan-genomes analysis pipeline" 28 : 416-418, 2012
7 Saladi L, "Native valve endocarditis due to Veillonella species : A case report and review of the literature" 2017 : 4896186-, 2017
8 Tatusova T, "NCBI prokaryotic genome annotation pipeline" 44 : 6614-6624, 2016
9 van den Bogert B, "Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples" 77 : 2071-2080, 2011
10 Roodt Y, "Identification of prophages and prophage remnants within the genome of Avibacterium paragallinarum bacterium" 2012 : 953609-, 2012
11 Pei Z, "Bacterial biota in the human distal esophagus" 101 : 4250-4255, 2004
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분석정보
인용정보 인용지수 설명보기
학술지 이력
| 연월일 | 이력구분 | 이력상세 | 등재구분 |
|---|---|---|---|
| 2023 | 평가예정 | 해외DB학술지평가 신청대상 (해외등재 학술지 평가) | |
| 2020-01-01 | 평가 | 등재학술지 유지 (해외등재 학술지 평가) | |
| 2013-12-02 | 학술지명변경 | 외국어명 : The Korean Journal of Microbiology -> Korean Journal of Microbiology | |
| 2010-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2008-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2006-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2004-01-01 | 평가 | 등재학술지 유지 (등재유지) | |
| 2001-01-01 | 평가 | 등재학술지 선정 (등재후보2차) | |
| 1998-07-01 | 평가 | 등재후보학술지 선정 (신규평가) |  |
학술지 인용정보
| 기준연도 | WOS-KCI 통합IF(2년) | KCIF(2년) | KCIF(3년) |
|---|---|---|---|
| 2016 | 0.21 | 0.21 | 0.21 |
| KCIF(4년) | KCIF(5년) | 중심성지수(3년) | 즉시성지수 |
| 0.26 | 0.24 | 0.48 | 0.02 |
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