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    Optimized Multivariate Analysis for the Discrimination of Cucumber Green Mosaic Mottle Virus-Infected Watermelon Seeds Based on Spectral Imaging

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    https://www.riss.kr/link?id=A106308542

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    다국어 초록 (Multilingual Abstract) kakao i 다국어 번역

    This study proposes a nondestructive sorting method based on the short-wave infrared hyperspectral imaging technique (SWIR-HIT) to detect and classify watermelon seeds infected with the cucumber green mosaic mottle virus (CGMMV). Virus-infected watermelon seeds were collected from virus-infected watermelon plants. Five plates each with 81 seeds were scanned. A total of 304 mean reflectance spectra were used to develop and evaluate virus-infected seed classification models with multivariate analysis methods such as partial least squares discriminant analysis (PLS-DA), support vector machine (SVM), and least squares support vector machine (LS-SVM). To determine the optimal preprocessing method, three preprocessing methods were employed: multivariate scatter correct (MSC) as well as first- and second-derivative preprocessing with the Savitzky–Golay algorithm. Among these methods, secondderivative preprocessing with the LS-SVM method showed an approximately 75% accuracy with a 0.57 kappa coefficient for all three classification classes (infected, infection suspected, and sound seeds). Binary classification between infected and sound seeds by LSSVM with second-derivative preprocessing showed an approximately 92% accuracy with a 0.75 kappa coefficient. To improve the classification accuracy, the genetic algorithm was implemented, and 9 bands were selected. The selected wavelengths were applied to develop and compare classification models with full wavelengths. The three-class classification with the selected bands showed an approximately 80%accuracy, whereas binary classification in infected and sound seeds showed a more than 93%accuracy with a 0.78 kappa coefficient. These results indicate that SWIR-HIT is a valuable nondestructive tool for rapidly classifying CGMMV-infected watermelon seeds using LS-SVM with raw spectra.
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    This study proposes a nondestructive sorting method based on the short-wave infrared hyperspectral imaging technique (SWIR-HIT) to detect and classify watermelon seeds infected with the cucumber green mosaic mottle virus (CGMMV). Virus-infected waterm...

    This study proposes a nondestructive sorting method based on the short-wave infrared hyperspectral imaging technique (SWIR-HIT) to detect and classify watermelon seeds infected with the cucumber green mosaic mottle virus (CGMMV). Virus-infected watermelon seeds were collected from virus-infected watermelon plants. Five plates each with 81 seeds were scanned. A total of 304 mean reflectance spectra were used to develop and evaluate virus-infected seed classification models with multivariate analysis methods such as partial least squares discriminant analysis (PLS-DA), support vector machine (SVM), and least squares support vector machine (LS-SVM). To determine the optimal preprocessing method, three preprocessing methods were employed: multivariate scatter correct (MSC) as well as first- and second-derivative preprocessing with the Savitzky–Golay algorithm. Among these methods, secondderivative preprocessing with the LS-SVM method showed an approximately 75% accuracy with a 0.57 kappa coefficient for all three classification classes (infected, infection suspected, and sound seeds). Binary classification between infected and sound seeds by LSSVM with second-derivative preprocessing showed an approximately 92% accuracy with a 0.75 kappa coefficient. To improve the classification accuracy, the genetic algorithm was implemented, and 9 bands were selected. The selected wavelengths were applied to develop and compare classification models with full wavelengths. The three-class classification with the selected bands showed an approximately 80%accuracy, whereas binary classification in infected and sound seeds showed a more than 93%accuracy with a 0.78 kappa coefficient. These results indicate that SWIR-HIT is a valuable nondestructive tool for rapidly classifying CGMMV-infected watermelon seeds using LS-SVM with raw spectra.

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    참고문헌 (Reference)

    1 Foody, G. M, "Status of land cover classification accuracy assessment"

    2 Gowen, A. A, "Recent applications of hyperspectral imaging in microbiology"

    3 Siripatrawan, U, "Rapid detection of Escherichia coli contamination in packaged fresh spinach using hyperspectral imaging"

    4 Lee, H, "Raman hyperspectral imaging for detection of watermelon seeds infected with acidovorax citrulli. Sensors, 17(10), 2188"

    5 Devos, O, "Parallel genetic algorithm cooptimization of spectral pre-processing and wavelength selection for PLS regression"

    6 Lee, K. W, "Occurrence of cucumber green mottle mosaic virus disease of watermelon in Korea"

    7 Caiya Zhang, "Nondestructive Prediction of Total Phenolics, Flavonoid Contents, and Antioxidant Capacity of Rice Grain Using Near-Infrared Spectroscopy" American Chemical Society (ACS) 56 (56): 8268-8272, 2008

    8 Hoonsoo Lee, "Non-destructive evaluation of bacteria-infected watermelon seeds using visible/near-infrared hyperspectral imaging" Wiley 97 (97): 1084-1092, 2017

    9 Feng, Y. Z, "Near-infrared hyperspectral imaging in tandem with partial least squares regression and genetic algorithm for non-destructive determination and visualization of Pseudomonas loads in chicken fillets"

    10 G. C. AINSWORTH, "MOSAIC DISEASES OF THE CUCUMBER" Wiley 22 (22): 55-67, 1935

    1 Foody, G. M, "Status of land cover classification accuracy assessment"

    2 Gowen, A. A, "Recent applications of hyperspectral imaging in microbiology"

    3 Siripatrawan, U, "Rapid detection of Escherichia coli contamination in packaged fresh spinach using hyperspectral imaging"

    4 Lee, H, "Raman hyperspectral imaging for detection of watermelon seeds infected with acidovorax citrulli. Sensors, 17(10), 2188"

    5 Devos, O, "Parallel genetic algorithm cooptimization of spectral pre-processing and wavelength selection for PLS regression"

    6 Lee, K. W, "Occurrence of cucumber green mottle mosaic virus disease of watermelon in Korea"

    7 Caiya Zhang, "Nondestructive Prediction of Total Phenolics, Flavonoid Contents, and Antioxidant Capacity of Rice Grain Using Near-Infrared Spectroscopy" American Chemical Society (ACS) 56 (56): 8268-8272, 2008

    8 Hoonsoo Lee, "Non-destructive evaluation of bacteria-infected watermelon seeds using visible/near-infrared hyperspectral imaging" Wiley 97 (97): 1084-1092, 2017

    9 Feng, Y. Z, "Near-infrared hyperspectral imaging in tandem with partial least squares regression and genetic algorithm for non-destructive determination and visualization of Pseudomonas loads in chicken fillets"

    10 G. C. AINSWORTH, "MOSAIC DISEASES OF THE CUCUMBER" Wiley 22 (22): 55-67, 1935

    11 Borin, A, "Least-squares support vector machines and near infrared spectroscopy for quantification of common adulterants in powdered milk"

    12 J.A.K. Suykens, "Least squares support vector machine classifiers" Springer Science and Business Media LLC 9 (9): 293-300, 1999

    13 Gowen, A. A, "Hyperspectral imaging–an emerging process analytical tool for food quality and safety control"

    14 Arjun S. Bangalore, "Genetic Algorithm-Based Method for Selecting Wavelengths and Model Size for Use with Partial Least-Squares Regression:  Application to Near-Infrared Spectroscopy" American Chemical Society (ACS) 68 (68): 4200-4212, 1996

    15 Seo, Y. W, "Development of hyperspectral imaging technique for Salmonella enteritidis and typhimurium on agar plates"

    16 Lee, H, "Detection of cucumber green mottle mosaic virus-infected watermelon seeds using a near-infrared (NIR) hyperspectral imaging system: application to seeds of the “Sambok Honey” cultivar"

    17 El-Adawy, T. A, "Characteristics and composition of watermelon, pumpkin, and paprika seed oils and flours" 49 (49): 1253-1259, 2001

    18 Carletta, J, "Assessing agreement on classification tasks: the kappa statistic" 22 (22): 249-254, 1996

    19 Gao, J, "Application of hyperspectral imaging technology to discriminate different geographical origins of Jatropha curcas L. seeds"

    20 Sylvie Chevallier, "Application of PLS-DA in multivariate image analysis" Wiley 20 (20): 221-229, 2006

    21 Westerhuis, J. A, "Analysis of multiblock and hierarchical PCA and PLS models" 12 (12): 301-321, 1998

    22 Schikora,M, "An image classification approach to analyze the suppression of plant immunity by the human pathogen Salmonella typhimurium"

    23 Jiao, L, "A novel genetic algorithm based on immunity. IEEE Transactions on Systems, Man, and Cybernetics - Part A: Systems and Humans"

    24 Osborne, W. W, "A modified selenite brilliantgreen medium for the isolation of Salmonella from egg products"

    25 Cohen, J, "A coefficient of agreement for nominal scales" 20 (20): 37-46, 1960

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    기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
    2016 0.15 0.15 0.15
    KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
    0.14 0.2 0.323 0.11
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