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      KCI등재 SCOPUS SCIE

      Gene expression analysis of “green tide” alga Ulva prolifera (Chlorophyta) in China

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      https://www.riss.kr/link?id=A104429928

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      다국어 초록 (Multilingual Abstract)

      Ulva prolifera (Ulvophyceae, Chlorophyta) is the causative species of the annual “green tides” in the Bohai Gulf of Northern China. In order to gain some more insight into the transcriptome of this fast-growing species of algae, we acquired 6,203 high-quality expressed-sequence-tags (ESTs),which were clustered into 4,080 unique sequences (UniSeqs).
      Functional classification revealed that most of the acquired transcripts were related to metabolic and biosynthetic processes,nucleotide binding, and cell part that might contribute to the organism’s rapid growth. Using 39 EST pools, 28 mitochondria genomes, and 18 chloroplast genomes from algae and land plants, we constructed three phylogenetic trees. These trees provided evidence that U. prolifera was in a sister position to Ulva linza, and shared a similar chloroplast origin with Pseudendoclonium akinetum. The findings of this study will improve our knowledge of the transcriptome and taxonomic position of U. prolifera.
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      Ulva prolifera (Ulvophyceae, Chlorophyta) is the causative species of the annual “green tides” in the Bohai Gulf of Northern China. In order to gain some more insight into the transcriptome of this fast-growing species of algae, we acquired 6,203 ...

      Ulva prolifera (Ulvophyceae, Chlorophyta) is the causative species of the annual “green tides” in the Bohai Gulf of Northern China. In order to gain some more insight into the transcriptome of this fast-growing species of algae, we acquired 6,203 high-quality expressed-sequence-tags (ESTs),which were clustered into 4,080 unique sequences (UniSeqs).
      Functional classification revealed that most of the acquired transcripts were related to metabolic and biosynthetic processes,nucleotide binding, and cell part that might contribute to the organism’s rapid growth. Using 39 EST pools, 28 mitochondria genomes, and 18 chloroplast genomes from algae and land plants, we constructed three phylogenetic trees. These trees provided evidence that U. prolifera was in a sister position to Ulva linza, and shared a similar chloroplast origin with Pseudendoclonium akinetum. The findings of this study will improve our knowledge of the transcriptome and taxonomic position of U. prolifera.

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      참고문헌 (Reference)

      1 Pang, S. J, "Tracking the algal origin of the Ulva bloom in the Yellow Sea by a combination of molecular, morphological and physiological analyses" 69 : 207-215, 2010

      2 Schmidt, H. A., "TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing" 18 : 502-504, 2002

      3 Weir, J. S. a. D, "THE METHYL FOLATE TRAP : A physiological response in man to prevent methyl group deficiency in kwashiorkor (methionine deficiency) and an explanation for folic-acid-induced exacerbation of subacute combined degeneration in pernicious anaemia" 318 : 337-340, 1981

      4 McFadden, G. I, "Primary and secondary endosymbiosis and the origin of plastids" 37 : 951-959, 2001

      5 Khan, H, "Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny" 24 : 1832-, 2007

      6 Stephanie J, "Null Association between Prostate Cancer and Serum Folate, Vitamin B6, Vitamin B12, and Homocysteine" 12 : 1271-1272, 2003

      7 Tan, I. H, "Molecular phylogenetic evidence for a reversible morphogenetic switch controlling the gross morphology of two common genera of green seaweeds, Ulva and Enteromorpha" 16 : 1011-, 1999

      8 Hillary SH, J. B., "Linnaeus was right all along: ulva and Enteromorpha are not distinct genera" 38 : 277-294, 2003

      9 Kanehisa, M, "KEGG: Kyoto encyclopedia of genes and genomes" 28 : 27-, 2000

      10 Leliaert, F, "Identity of the Qingdao algal bloompre_532 147.. 151" 57 : 147-151, 2009

      1 Pang, S. J, "Tracking the algal origin of the Ulva bloom in the Yellow Sea by a combination of molecular, morphological and physiological analyses" 69 : 207-215, 2010

      2 Schmidt, H. A., "TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing" 18 : 502-504, 2002

      3 Weir, J. S. a. D, "THE METHYL FOLATE TRAP : A physiological response in man to prevent methyl group deficiency in kwashiorkor (methionine deficiency) and an explanation for folic-acid-induced exacerbation of subacute combined degeneration in pernicious anaemia" 318 : 337-340, 1981

      4 McFadden, G. I, "Primary and secondary endosymbiosis and the origin of plastids" 37 : 951-959, 2001

      5 Khan, H, "Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny" 24 : 1832-, 2007

      6 Stephanie J, "Null Association between Prostate Cancer and Serum Folate, Vitamin B6, Vitamin B12, and Homocysteine" 12 : 1271-1272, 2003

      7 Tan, I. H, "Molecular phylogenetic evidence for a reversible morphogenetic switch controlling the gross morphology of two common genera of green seaweeds, Ulva and Enteromorpha" 16 : 1011-, 1999

      8 Hillary SH, J. B., "Linnaeus was right all along: ulva and Enteromorpha are not distinct genera" 38 : 277-294, 2003

      9 Kanehisa, M, "KEGG: Kyoto encyclopedia of genes and genomes" 28 : 27-, 2000

      10 Leliaert, F, "Identity of the Qingdao algal bloompre_532 147.. 151" 57 : 147-151, 2009

      11 Hallstrom, B. M, "Gnathostome phylogenomics utilizing lungfish EST sequences" 26 : 463-471, 2009

      12 Xiaolei, F, "Generation and analysis of 5318 expressed sequence tags from the filamentous sporophyte of Porphyra haitanensis (Rhodophyta)" 43 : 1287-1294, 2007

      13 Sidharthan, M, "Fouling coverage of a green tide alga, Ulva pertusa on some antifouling test surfaces exposed to Ayagin harbor waters, east coast of South Korea" 25 : 39-43, 2004

      14 Raffaelli, D. G, "Ecological impact of green macroalgal blooms" 36 : 97-125, 1998

      15 Wolff, G, "Complete Sequence of the Mitochondrial DNA of the Chlorophyte Alga Prototheca wickerhamii: Gene Content and Genome Organization" 237 : 75-86, 1994

      16 Nosenko, T, "Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis" 23 : 2026-2038, 2006

      17 Conesa, A., "Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research" 21 : 3674-3676, 2005

      18 Ewing, B, "Base-calling of automated sequencer traces usingPhred. I. Accuracy assessment" 8 : 175-, 1998

      19 Ewing, B, "Base-calling of automated sequencer traces using phred. II. Error probabilities" 8 : 186-194, 1998

      20 Niu, J, "Analysis of expressed sequence tags from the Ulva prolifera (Chlorophyta)" 28 : 26-36, 2010

      21 Van den Hoek, C, "Algae: an introduction to phycology" Cambridge University Press 1995

      22 Gao, S., "A Strategy for the Proliferation of Ulva prolifera, Main Causative Species of Green Tides, with Formation of Sporangia by Fragmentation" 5 : 8571-, 2010

      23 Shan Gao, "A Strategy for the Proliferation of Ulva prolifera, Main Causative Species of Green Tides, with Formation of Sporangia by Fragmentation" 5 : 8571-, 2010

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      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2015-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2012-05-07 학술지명변경 한글명 : 한국유전학회지 -> Genes & Genomics KCI등재
      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2009-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2008-04-14 학술지명변경 외국어명 : Korean Journal of Genetics -> Genes and Genomics KCI등재
      2007-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2003-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2002-01-01 평가 등재후보학술지 유지 (등재후보1차) KCI등재후보
      1999-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.51 0.12 0.38
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.32 0.27 0.258 0.02
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