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    Clinical Practice Guideline for Blood-based Circulating Tumor DNA Assays

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    https://www.riss.kr/link?id=A109041932

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    다국어 초록 (Multilingual Abstract) kakao i 다국어 번역

    Circulating tumor DNA (ctDNA) has emerged as a promising tool for various clinical applications, including early diagnosis, therapeutic target identification, treatment response monitoring, prognosis evaluation, and minimal residual disease detection. Consequently, ctDNA assays have been incorporated into clinical practice. In this review, we offer an in-depth exploration of the clinical implementation of ctDNA assays. Notably, we examined existing evidence related to pre-analytical procedures, analytical components in current technologies, and result interpretation and reporting processes. The primary objective of this guidelines is to provide recommendations for the clinical utilization of ctDNA assays.
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    Circulating tumor DNA (ctDNA) has emerged as a promising tool for various clinical applications, including early diagnosis, therapeutic target identification, treatment response monitoring, prognosis evaluation, and minimal residual disease detection....

    Circulating tumor DNA (ctDNA) has emerged as a promising tool for various clinical applications, including early diagnosis, therapeutic target identification, treatment response monitoring, prognosis evaluation, and minimal residual disease detection. Consequently, ctDNA assays have been incorporated into clinical practice. In this review, we offer an in-depth exploration of the clinical implementation of ctDNA assays. Notably, we examined existing evidence related to pre-analytical procedures, analytical components in current technologies, and result interpretation and reporting processes. The primary objective of this guidelines is to provide recommendations for the clinical utilization of ctDNA assays.

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    참고문헌 (Reference)

    1 Willis J, "Validation of microsatellite instability detection using a comprehensive plasma-based genotyping panel" 25 : 7035-7045, 2019

    2 Crysup B, "Using unique molecular identifiers to improve allele calling in low-template mixtures" 63 : 102807-, 2023

    3 Jacobs MT, "Use of low-frequency driver mutations detected by cell-free circulating tumor DNA to guide targeted therapy in non-small-cell lung cancer : a multicenter case series" 2 : 1-10, 2018

    4 Acuna-Hidalgo R, "Ultra-sensitive sequencing identifies high prevalence of clonal hematopoiesis-associated mutations throughout adult life" 101 : 50-64, 2017

    5 Jamal-Hanjani M, "Tracking the evolution of non-small-cell lung cancer" 376 : 2109-2121, 2017

    6 Bruehl FK, "Tiered somatic variant classification adoption has increased worldwide with some practice differences based on location and institutional setting" 146 : 822-832, 2022

    7 Ponti G, "The value of fluorimetry(Qubit)and spectrophotometry(NanoDrop)in the quantification of cell-free DNA(cfDNA)in malignant melanoma and prostate cancer patients" 479 : 14-19, 2018

    8 Henriksen TV, "The effect of surgical trauma on circulating free DNA levels in cancer patients-implications for studies of circulating tumor DNA" 14 : 1670-1679, 2020

    9 Parpart-Li S, "The effect of preservative and temperature on the analysis of circulating tumor DNA" 23 : 2471-2477, 2017

    10 Li Z, "The cornerstone of integrating circulating tumor DNA into cancer management" 1871 : 1-11, 2019

    1 Willis J, "Validation of microsatellite instability detection using a comprehensive plasma-based genotyping panel" 25 : 7035-7045, 2019

    2 Crysup B, "Using unique molecular identifiers to improve allele calling in low-template mixtures" 63 : 102807-, 2023

    3 Jacobs MT, "Use of low-frequency driver mutations detected by cell-free circulating tumor DNA to guide targeted therapy in non-small-cell lung cancer : a multicenter case series" 2 : 1-10, 2018

    4 Acuna-Hidalgo R, "Ultra-sensitive sequencing identifies high prevalence of clonal hematopoiesis-associated mutations throughout adult life" 101 : 50-64, 2017

    5 Jamal-Hanjani M, "Tracking the evolution of non-small-cell lung cancer" 376 : 2109-2121, 2017

    6 Bruehl FK, "Tiered somatic variant classification adoption has increased worldwide with some practice differences based on location and institutional setting" 146 : 822-832, 2022

    7 Ponti G, "The value of fluorimetry(Qubit)and spectrophotometry(NanoDrop)in the quantification of cell-free DNA(cfDNA)in malignant melanoma and prostate cancer patients" 479 : 14-19, 2018

    8 Henriksen TV, "The effect of surgical trauma on circulating free DNA levels in cancer patients-implications for studies of circulating tumor DNA" 14 : 1670-1679, 2020

    9 Parpart-Li S, "The effect of preservative and temperature on the analysis of circulating tumor DNA" 23 : 2471-2477, 2017

    10 Li Z, "The cornerstone of integrating circulating tumor DNA into cancer management" 1871 : 1-11, 2019

    11 Tomczak K, "The Cancer Genome Atlas(TCGA) : an immeasurable source of knowledge" 19 : A68-A77, 2015

    12 Horak P, "Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC)" 24 : 986-998, 2022

    13 Richards S, "Standards and guidelines for the interpretation of sequence variants : a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology" 17 : 405-424, 2015

    14 Li MM, "Standards and guidelines for the interpretation and reporting of sequence variants in cancer: A joint consensus recommendation of the Association for Molecular Pathology, American Society of Clinical Oncology, and College of American Pathologists" 19 : 4-23, 2017

    15 Chakravarty D, "Somatic genomic testing in patients with metastatic or advanced cancer : ASCO provisional clinical opinion" 40 : 1231-1258, 2022

    16 Sequence Variant Working Group, "Sequence Variant Interpretation"

    17 Koessler T, "Reliability of liquid biopsy analysis : an inter-laboratory comparison of circulating tumor DNA extraction and sequencing with different platforms" 100 : 1475-1484, 2020

    18 Heitzer E, "Recommendations for a practical implementation of circulating tumor DNA mutation testing in metastatic non-small-cell lung cancer" 7 : 100399-, 2022

    19 Wang Q, "Real-time PCR evaluation of cell-free DNA subjected to various storage and shipping conditions" 14 : 12797-12804, 2015

    20 Meddeb R, "Quantifying circulating cell-free DNA in humans" 9 : 5220-, 2019

    21 van Ginkel JH, "Preanalytical blood sample workup for cell-free DNA analysis using Droplet Digital PCR for future molecular cancer diagnostics" 6 : 2297-2307, 2017

    22 Li MM, "Points to consider for reporting of germline variation in patients undergoing tumor testing : a statement of the American College of Medical Genetics and Genomics(ACMG)" 22 : 1142-1148, 2020

    23 Abbosh C, "Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution" 545 : 446-451, 2017

    24 Medina Diaz I, "Performance of Streck cfDNA blood collection tubes for liquid biopsy testing" 11 : e0166354-, 2016

    25 "Performance evaluation guidelines for next generation sequencing in vitro diagnostic medical devices" Ministry of Food and Drug Safety

    26 ICGC/TCGA Pan-Cancer of Whole Genomes Consortium, "Pan-cancer analysis of whole genomes" 578 : 82-93, 2020

    27 Song Ho Hyun ; Park Hye Ran ; Cho Doohwan ; Bang Hae In ; 오혁진 ; Kim Jieun, "Optimization of a protocol for isolating cell-free DNA from cerebrospinal fluid" 2023

    28 Chakravarty D, "OncoKB : a precision oncology knowledge base" 2017 : PO.17.00011-, 2017

    29 Chakravarty D, "OncoKB : a precision oncology knowledge base" 2017 : 2017

    30 "On-site inspection evaluation checklist"

    31 Georgiadis A, "Noninvasive detection of microsatellite instability and high tumor mutation burden in cancer patients treated with PD-1 blockade" 25 : 7024-7034, 2019

    32 Singh RR, "Next-generation sequencing in high-sensitive detection of mutations in tumors: challenges, advances, and applications" 22 : 994-1007, 2020

    33 Parikh AR, "Minimal residual disease detection using a plasma-only circulating tumor DNA assay in patients with colorectal cancer" 27 : 5586-5594, 2021

    34 Qiu P, "Measuring tumor mutational burden(TMB)in plasma from mCRPC patients using two commercial NGS assays" 9 : 114-, 2019

    35 Kim SY, "Manual for guideline adaptation ver 2.0" National Evidence-based Healthcare Collaborating Agency 2011

    36 Lee JS, "Liquid biopsy in pancreatic ductal adenocarcinoma : current status of circulating tumor cells and circulating tumor DNA" 13 : 1623-1650, 2019

    37 Kloten V, "Liquid biopsy in colon cancer : comparison of different circulating DNA extraction systems following absolute quantification of KRAS mutations using Intplex allele-specific PCR" 8 : 86253-86263, 2017

    38 "Laboratory accreditation program checklist, molecular diagnostic test"

    39 Zheng Z, "Intratumor heterogeneity : A new perspective on colorectal cancer research" 9 : 7637-7645, 2020

    40 Newman AM, "Integrated digital error suppression for improved detection of circulating tumor DNA" 34 : 547-555, 2016

    41 Stout LA, "Identification of germline cancer predisposition variants during clinical ctDNA testing" 11 : 13624-, 2021

    42 Bourbon E, "How to obtain a high quality ctDNA in lymphoma patients : preanalytical tips and tricks" 14 : 617-, 2021

    43 Wang TT, "High efficiency error suppression for accurate detection of low-frequency variants" 47 : e87-, 2019

    44 Jennings LJ, "Guidelines for validation of next-generation sequencing-based oncology panels : A joint consensus recommendation of the Association for Molecular Pathology and College of American Pathologists" 19 : 341-365, 2017

    45 Meddeb R, "Guidelines for the preanalytical conditions for analyzing circulating cell-free DNA" 65 : 623-633, 2019

    46 Cristiano S, "Genome-wide cell-free DNA fragmentation in patients with cancer" 570 : 385-389, 2019

    47 Godsey JH, "Generic protocols for the analytical validation of next-generation sequencing-based ctDNA assays : a joint consensus recommendation of the BloodPAC’s Analytical Variables Working Group" 66 : 1156-1166, 2020

    48 Trigg RM, "Factors that influence quality and yield of circulating-free DNA : a systematic review of the methodology literature" 4 : e00699-, 2018

    49 Marcus L, "FDA approval summary : pembrolizumab for the treatment of tumor mutational burden-high solid tumors" 27 : 4685-4689, 2021

    50 Stockley T, "Evidence-based best practices for EGFR T790M testing in lung cancer in Canada" 25 : 163-169, 2018

    51 Diefenbach RJ, "Evaluation of commercial kits for purification of circulating free DNA" 228-9 : 21-27, 2018

    52 Deveson IW, "Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology" 39 : 1115-1128, 2021

    53 Mouliere F, "Enhanced detection of circulating tumor DNA by fragment size analysis" 10 : eaat4921-, 2018

    54 Sozzi G, "Effects of prolonged storage of whole plasma or isolated plasma DNA on the results of circulating DNA quantification assays" 97 : 1848-1850, 2005

    55 Chan KC, "Effects of preanalytical factors on the molecular size of cell-free DNA in blood" 51 : 781-784, 2005

    56 Chiu RW, "Effects of blood-processing protocols on fetal and total DNA quantification in maternal plasma" 47 : 1607-1613, 2001

    57 Abbosh C, "Early stage NSCLC – challenges to implementing ctDNA-based screening and MRD detection" 15 : 577-586, 2018

    58 Pascual J, "ESMO recommendations on the use of circulating tumour DNA assays for patients with cancer : a report from the ESMO Precision Medicine Working Group" 33 : 750-768, 2022

    59 Barra GB, "EDTA-mediated inhibition of DNases protects circulating cell-free DNA from ex vivo degradation in blood samples" 48 : 976-981, 2015

    60 Jain M, "Direct comparison of QIAamp DSP Virus Kit and QIAamp Circulating Nucleic Acid Kit regarding cell-free fetal DNA isolation from maternal peripheral blood" 43 : 13-19, 2019

    61 Schmitt MW, "Detection of ultra-rare mutations by next-generation sequencing" 109 : 14508-14513, 2012

    62 Sundaresan TK, "Detection of T790M, the acquired resistance EGFR mutation, by tumor biopsy versus noninvasive blood-based analyses" 22 : 1103-1110, 2016

    63 Kinde I, "Detection and quantification of rare mutations with massively parallel sequencing" 108 : 9530-9535, 2011

    64 Moding EJ, "Detecting liquid remnants of solid tumors : circulating tumor DNA minimal residual disease" 11 : 2968-2986, 2021

    65 Heitzer E, "Current and future perspectives of liquid biopsies in genomics-driven oncology" 20 : 71-88, 2019

    66 조선미 ; Lee Hye Sun ; Jeon Soyoung ; Kim Yoonjung ; Kong Sun-Young ; Lee Jin Kyung ; Lee Kyung-A, "Cost-effectiveness analysis of three diagnostic strategies for the detection of EGFR mutation in advanced non-small cell lung cancer" 43 : 605-613, 2023

    67 Bos MK, "Comparison of variant allele frequency and number of mutant molecules as units of measurement for circulating tumor DNA" 15 : 57-66, 2021

    68 Bronkhorst AJ, "Comparison of methods for the isolation of cell-free DNA from cell culture supernatant" 42 : 1010428320916314-, 2020

    69 Pérez-Barrios C, "Comparison of methods for circulating cell-free DNA isolation using blood from cancer patients : impact on biomarker testing" 5 : 665-672, 2016

    70 Morgan SR, "Comparison of KRAS mutation assessment in tumor DNA and circulating free DNA in plasma and serum samples" 5 : 15-22, 2012

    71 Genovese G, "Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence" 371 : 2477-2487, 2014

    72 Shin Saeam ; Woo Hye In ; 김종원 ; M.D. Yoonjung Kim ; Lee Kyung-A, "Clinical practice guidelines for pre-analytical procedures of plasma epidermal growth factor receptor variant testing" 42 : 141-149, 2022

    73 Larson KL, "Clinical outcomes of molecular tumor boards : a systematic review" 5 : 2021

    74 Mouliere F, "Circulating tumor-derived DNA is shorter than somatic DNA in plasma" 112 : 3178-3179, 2015

    75 Ignatiadis M, "Circulating tumor cells and circulating tumor DNA : challenges and opportunities on the path to clinical utility" 21 : 4786-4800, 2015

    76 Merker JD, "Circulating tumor DNA analysis in patients with cancer : American Society of Clinical Oncology and College of American Pathologists joint review" 36 : 1631-1641, 2018

    77 Azad TD, "Circulating tumor DNA analysis for detection of minimal residual disease after chemoradiotherapy for localized esophageal cancer" 158 : 494-505, 2020

    78 Kamat AA, "Circulating cell-free DNA : a novel biomarker for response to therapy in ovarian carcinoma" 5 : 1369-1374, 2006

    79 El Messaoudi S, "Circulating cell free DNA : preanalytical considerations" 424 : 222-230, 2013

    80 Jung M, "Changes in concentration of DNA in serum and plasma during storage of blood samples" 49 : 1028-1029, 2003

    81 Helman E, "Cell-free DNA next-generation sequencing prediction of response and resistance to third-generation EGFR inhibitor" 19 : 518-530, 2018

    82 Gandara DR, "Blood-based tumor mutational burden as a predictor of clinical benefit in non-small-cell lung cancer patients treated with atezolizumab" 24 : 1441-1448, 2018

    83 Clarke CA, "BLOODPAC : collaborating to chart a path towards blood-based screening for early cancer detection" 16 : 5-9, 2023

    84 Ma X, "Analysis of error profiles in deep next-generation sequencing data" 20 : 50-, 2019

    85 Pécuchet N, "Analysis of base-position error rate of next-generation sequencing to detect tumor mutations in circulating DNA" 62 : 1492-1503, 2016

    86 Miller DT, "ACMG SF v3. 1 list for reporting of secondary findings in clinical exome and genome sequencing : A policy statement of the American College of Medical Genetics and Genomics(ACMG)" 24 : 1407-1414, 2022

    87 Baker A, "A review of grading systems for evidence-based guidelines produced by medical specialties" 10 : 358-363, 2010

    88 Wagner AH, "A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer" 52 : 448-457, 2020

    89 Mateo J, "A framework to rank genomic alterations as targets for cancer precision medicine : the ESMO Scale for Clinical Actionability of molecular Targets(ESCAT)" 29 : 1895-1902, 2018

    90 Sorber L, "A comparison of cell-free DNA isolation kits : isolation and quantification of cell-free DNA in plasma" 19 : 162-168, 2017

    91 The Korean Society of Radiology, "2020 Clinical imaging guidelines for justification of diagnostic imaging study by types of patients"

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