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      KCI등재 SCIE SCOPUS

      Cloning, Annotation and Expression Analysis of Mycoparasitism- Related Genes in Trichoderma harzianum 88

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      https://www.riss.kr/link?id=A103761092

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      다국어 초록 (Multilingual Abstract)

      Trichoderma harzianum 88, a filamentous soil fungus, is an effective biocontrol agent against several plant pathogens. High-throughput sequencing was used here to study the mycoparasitism mechanisms of T. harzianum 88. Plate confrontation tests of T. ...

      Trichoderma harzianum 88, a filamentous soil fungus, is an effective biocontrol agent against several plant pathogens.
      High-throughput sequencing was used here to study the mycoparasitism mechanisms of T. harzianum 88. Plate confrontation tests of T. harzianum 88 against plant pathogens were conducted, and a cDNA library was constructed from T. harzianum 88 mycelia in the presence of plant pathogen cell walls. Randomly selected transcripts from the cDNA library were compared with eukaryotic plant and fungal genomes.
      Of the 1,386 transcripts sequenced, the most abundant Gene Ontology (GO) classification group was “physiological process”. Differential expression of 19 genes was confirmed by real-time RT-PCR at different mycoparasitism stages against plant pathogens. Gene expression analysis revealed the transcription of various genes involved in mycoparasitism of T. harzianum 88. Our study provides helpful insights into the mechanisms of T. harzianum 88-plant pathogen interactions.

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      참고문헌 (Reference)

      1 Gordon, D., "Viewing and Editing Assembled Sequences Using Consed, In Curr. Protoc. Bioinformatics" John Wiley & Co 11.2.1-1.2.43, 2003

      2 Zhang, S., "Two hydrophobins are involved in fungal spore coat rodlet layer assembly and each play distinct roles in surface interactions, development and pathogenesis in the entomopathogenic fungus, Beauveria bassiana" 80 : 811-826, 2011

      3 Druzhinina, I. S., "Trichoderma: the genomics of opportunistic success" 9 : 749-759, 2011

      4 Moran-Diez, E., "Transcriptomic response of Arabidopsis thaliana after 24 h incubation with the biocontrol fungus Trichoderma harzianum" 169 : 614-620, 2012

      5 Bouck, A., "The molecular ecologist’s guide toexpressed sequence tags" 16 : 907-924, 2007

      6 Cortes, C., "The expression of genes involved in parasitism by Trichoderma harzianum is triggered by a diffusible factor" 260 : 218-225, 1998

      7 Petersen, T. N., "SignalP 4.0: discriminating signal peptides from transmembrane regions" 8 : 785-786, 2011

      8 Almeida, F. B., "Mycoparasitism studies of Trichoderma harzianum strains against Rhizoctonia solani: evaluation of coiling and hydrolytic enzyme production" 29 : 1189-1193, 2007

      9 Yang, C. A., "Monomeric L-amino acid oxidase-induced mitochondrial dysfunction in Rhizoctonia solani reveals a novel antagonistic mechanism of Trichoderma harzianum ETS 323" 60 : 2464-2471, 2012

      10 Hermosa, M. R., "Molecular characterization and identification of biocontrol isolates of Trichoderma spp" 66 : 1890-1898, 2000

      1 Gordon, D., "Viewing and Editing Assembled Sequences Using Consed, In Curr. Protoc. Bioinformatics" John Wiley & Co 11.2.1-1.2.43, 2003

      2 Zhang, S., "Two hydrophobins are involved in fungal spore coat rodlet layer assembly and each play distinct roles in surface interactions, development and pathogenesis in the entomopathogenic fungus, Beauveria bassiana" 80 : 811-826, 2011

      3 Druzhinina, I. S., "Trichoderma: the genomics of opportunistic success" 9 : 749-759, 2011

      4 Moran-Diez, E., "Transcriptomic response of Arabidopsis thaliana after 24 h incubation with the biocontrol fungus Trichoderma harzianum" 169 : 614-620, 2012

      5 Bouck, A., "The molecular ecologist’s guide toexpressed sequence tags" 16 : 907-924, 2007

      6 Cortes, C., "The expression of genes involved in parasitism by Trichoderma harzianum is triggered by a diffusible factor" 260 : 218-225, 1998

      7 Petersen, T. N., "SignalP 4.0: discriminating signal peptides from transmembrane regions" 8 : 785-786, 2011

      8 Almeida, F. B., "Mycoparasitism studies of Trichoderma harzianum strains against Rhizoctonia solani: evaluation of coiling and hydrolytic enzyme production" 29 : 1189-1193, 2007

      9 Yang, C. A., "Monomeric L-amino acid oxidase-induced mitochondrial dysfunction in Rhizoctonia solani reveals a novel antagonistic mechanism of Trichoderma harzianum ETS 323" 60 : 2464-2471, 2012

      10 Hermosa, M. R., "Molecular characterization and identification of biocontrol isolates of Trichoderma spp" 66 : 1890-1898, 2000

      11 Lin, Y. R., "Involvement of pachybasin and emodin in self-regulation of Trichoderma harzianum mycoparasitic coiling" 60 : 2123-2128, 2012

      12 Yang, H. H., "Induced proteome of Trichoderma harzianum by Botrytis cinerea" 113 : 924-932, 2009

      13 Reithner, B., "Identification of mycoparasitism-related genes in Trichoderma atroviride" 77 : 4361-4370, 2011

      14 Liu, P.G., "Identification of genes with a biocontrol function in Trichoderma harzianum mycelium using the expressed sequence tag approach" 156 : 416-423, 2005

      15 Gotz, S., "High-throughput functional annotation and data mining with the Blast2GO suite" 36 : 3420-3435, 2008

      16 Vizcaino, J. A., "Generation, annotation, and analysis of ESTs from four different Trichoderma strains grown under conditions related to biocontrol" 75 : 853-862, 2007

      17 Vizcaino, J. A., "Generation, annotation and analysis of ESTs from Trichoderma harzianum CECT 2413" 7 : 193-, 2006

      18 Buensanteai, N., "Expression and purification of biologically active Trichoderma virens proteinaceous elicitor Sm1 in Pichia pastoris" 72 : 131-138, 2010

      19 Liu, Z., "Expressed sequence tags-based identification of genes in a biocontrol strain Trichoderma asperellum" 37 : 3673-3681, 2010

      20 Bae, H., "Endophytic Trichoderma isolates from tropical environments delay disease onset and induce resistance against Phytophthora capsici in hot pepper using multiple mechanisms" 24 : 336-351, 2011

      21 Alizadeh, F., "Differential expression of oil palm pathology genes during interactions with Ganoderma boninense and Trichoderma harzianum" 168 : 1106-1113, 2011

      22 Adams, M. D., "Complementary DNA sequencing : expressed sequence tags and human genome project" 252 : 1651-1656, 1991

      23 Kubicek, C. P., "Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma" 12 : 40-, 2011

      24 Carsolio, C., "Characterization of ech-42, a Trichoderma harzianum endochitinase gene expressed during mycoparasitism" 91 : 10903-10907, 1994

      25 Restuccia, C., "Biological control of peach fungal pathogens by commercial products and indigenous yeasts" 69 : 2465-2470, 2006

      26 Altschul, S. F., "Basic local alignment search tool" 215 : 403-410, 1990

      27 Ewing, B., "Base-calling of automated sequencer traces using Phred. II. Error probabilities" 8 : 186-194, 1998

      28 Livak, K., "Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method" 25 : 402-408, 2001

      29 Zhang, H. Y., "Analysis of expressed sequence tags from Chaetomium cupreum grown under conditions associated with mycoparasitism" 48 : 275-280, 2009

      30 Camon, E. B., "An evaluation of GO annotation retrieval for BioCreAtIvE and GOA" 1 : 17-, 2005

      31 Steiger, M. G., "An accurate normalization strategy for RT-qPCR in Hypocrea jecorina (Trichoderma reesei)" 145 : 30-37, 2010

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