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      KCI등재 SCOPUS SCIE

      The Acetylation Level of rDNA in Brassica campestris

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      https://www.riss.kr/link?id=A104509409

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      다국어 초록 (Multilingual Abstract)

      Ribosomal DNA is an important repeated sequence that forms the nucleolus at the interphase. Its transcription into ribosomal RNA for ribosome biogenesis also represents a transitional point for several cellular processes, including cell-cycle progression, gene-silencing,and formation of the ribonucleoprotein complex. The levels of rDNA acetylation have an important role in regulating structural changes in rDNA chromatin and transcriptional activity. Using root-tip samples from Brassica campestris, we determined that some rDNA chromatin is located in the heterochromatin regions while some is de-condensed and found in euchromatin regions.
      Immuno-staining results showed that histone H4K5acetylation and H4 tetra-acetylation signals are dispersed within the euchromatin. Analysis of the promoter and exon regions of rDNA via chromatin immuno-precipitation (ChIP) revealed a connection between histone acetylation and rDNA conformation.
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      Ribosomal DNA is an important repeated sequence that forms the nucleolus at the interphase. Its transcription into ribosomal RNA for ribosome biogenesis also represents a transitional point for several cellular processes, including cell-cycle progress...

      Ribosomal DNA is an important repeated sequence that forms the nucleolus at the interphase. Its transcription into ribosomal RNA for ribosome biogenesis also represents a transitional point for several cellular processes, including cell-cycle progression, gene-silencing,and formation of the ribonucleoprotein complex. The levels of rDNA acetylation have an important role in regulating structural changes in rDNA chromatin and transcriptional activity. Using root-tip samples from Brassica campestris, we determined that some rDNA chromatin is located in the heterochromatin regions while some is de-condensed and found in euchromatin regions.
      Immuno-staining results showed that histone H4K5acetylation and H4 tetra-acetylation signals are dispersed within the euchromatin. Analysis of the promoter and exon regions of rDNA via chromatin immuno-precipitation (ChIP) revealed a connection between histone acetylation and rDNA conformation.

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      참고문헌 (Reference)

      1 Preuss S, "rRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch" 1769 : 383-392, 2007

      2 Yang F, "Trichostatin A and 5-azacytidine both cause an increase in global histone H4 acetylation and a decrease in global DNA and H3K9 methylation during mitosis in maize" 10 : 178-, 2010

      3 Hu Y, "Trichostatin A Selectively Suppresses the Cold- Induced Transcription of the ZmDREB1 Gene in Maize" 6 : 22132-, 2011

      4 Jenuwein T, "Translating the histone code" 293 : 1074-1080, 2001

      5 Claypool JA, "Tor pathway regulates Rrn3pdependent recruitment of yeast RNA polymerase I to the promoter but does not participate in alteration of the number of active genes" 15 : 946-956, 2004

      6 Santoro R, "The silence of the ribosomal RNA genes. Cell Mol Life Sci" 62 : 2067-2079, 2005

      7 Li J, "Telomere and 45S rDNA sequences are structurally linked on the chromosomes in Chrysanthemum segetum L" 249 : 207-215, 2012

      8 Kornberg RD, "Structure of chromatin" 46 : 931-954, 1977

      9 Sandmeier JJ, "RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase" 21 : 4959-4968, 2002

      10 McStay B, "Nucleolar dominance: a model for rRNA gene silencing" 20 : 1207-1214, 2006

      1 Preuss S, "rRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch" 1769 : 383-392, 2007

      2 Yang F, "Trichostatin A and 5-azacytidine both cause an increase in global histone H4 acetylation and a decrease in global DNA and H3K9 methylation during mitosis in maize" 10 : 178-, 2010

      3 Hu Y, "Trichostatin A Selectively Suppresses the Cold- Induced Transcription of the ZmDREB1 Gene in Maize" 6 : 22132-, 2011

      4 Jenuwein T, "Translating the histone code" 293 : 1074-1080, 2001

      5 Claypool JA, "Tor pathway regulates Rrn3pdependent recruitment of yeast RNA polymerase I to the promoter but does not participate in alteration of the number of active genes" 15 : 946-956, 2004

      6 Santoro R, "The silence of the ribosomal RNA genes. Cell Mol Life Sci" 62 : 2067-2079, 2005

      7 Li J, "Telomere and 45S rDNA sequences are structurally linked on the chromosomes in Chrysanthemum segetum L" 249 : 207-215, 2012

      8 Kornberg RD, "Structure of chromatin" 46 : 931-954, 1977

      9 Sandmeier JJ, "RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase" 21 : 4959-4968, 2002

      10 McStay B, "Nucleolar dominance: a model for rRNA gene silencing" 20 : 1207-1214, 2006

      11 Grummt I, "Life on a planet of its own: regulation of RNA polymerase I transcription in the nucleolus" 17 : 1691-1702, 2003

      12 Lusser A, "Histone acetylation: lessons from the plant kingdom" 6 : 59-65, 2001

      13 Jasencakova Z, "Histone H4 acetylation of euchromatin and heterochromatin is cell cycle dependent and correlated with replication rather than with transcription" 12 : 2087-2100, 2000

      14 Zhang J, "Establishment of transcriptional competence in early and late S phase" 420 : 198-202, 2002

      15 Peng JC, "Epigenetic regulation of heterochromatic DNA stability" 18 : 204-211, 2008

      16 Murayama A, "Epigenetic control of rDNA loci in response to intracellular energy status" 133 : 627-639, 2008

      17 Clayton AL, "Enhanced histone acetylation and transcription: a dynamic perspective" 23 : 289-296, 2006

      18 Grummt I, "Different epigenetic layers engage in complex crosstalk to define the epigenetic state of mammalian rRNA genes" 16 (16): 21-27, 2007

      19 Fuchs J, "Chromosomal histone modification patterns--from conservation to diversity" 11 : 199-208, 2006

      20 Haring M, "Chromatin immunoprecipitation: optimization, quantitativeanalysis and data normalization" 3 : 11-, 2007

      21 Crane-Robinson C, "Chromatin immunoprecipitation assays in acetylationmapping of higher eukaryotes" 304 : 533-547, 1999

      22 Mathieu O, "Changes in 5S rDNA chromatin organization and transcription during heterochromatin establishment in Arabidopsis" 15 : 2929-2939, 2003

      23 Turner BM, "Cellular memory and the histone code" 111 : 285-291, 2002

      24 Krebs JE, "Cell cycle-regulated histone acetylation required for expression of the yeast HO gene" 13 : 1412-1421, 1999

      25 Moss T, "At the center of eukaryotic life" 109 : 545-548, 2002

      26 Zhang L, "ABA treatment of germinating maize seeds induces VP1 gene expression and selective promoter-associated histone acetylation" 143 : 287-296, 2011

      27 Loidl P, "A plant dialect of the histone language" 9 : 84-90, 2004

      28 Li L, "A novel approach to prepare extended DNA fibers in plants" 63 : 114-117, 2005

      29 Moss T, "A housekeeper with power of attorney: the rRNA genes in ribosome biogenesis" 64 : 29-49, 2007

      30 Lawrence RJ, "A concerted DNA methylation/ histone methylation switch regulates rRNA gene dosage control and nucleolar dominance" 13 : 599-609, 2004

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