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      KCI등재후보

      A report of 10 unrecorded bacterial species of Korea, belonging to the phylum Firmicutes

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      https://www.riss.kr/link?id=A105119831

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      다국어 초록 (Multilingual Abstract) kakao i 다국어 번역

      To investigate the indigenous prokaryotic species diversity in Korea, various environmental samples from diverse ecosystems were examined taxonomically. The isolated bacterial strains were identified based on 16S rRNA gene sequences, and those exhibiting at least 98.7% sequence similarity with known bacterial species but never reported in Korea were selected as unrecorded species. As an outcome of this study, 10 unrecorded bacterial species belonging to the phylum Firmicutes were discovered from various sources such as soil, tidal flat, fresh water, sea water, kimchi and gut of Fulvia mutica. The unrecorded species were assigned to 7 different genera of 5 families, namely Bacillus and Ornithinibacillus of Bacillaceae, Exiguobacterium of Exiguobacteriaceae, Brevibacillus and Paenibacillus of Paenibacillaceae, Staphylococcus of Staphylococcaceae, and Lactococcus of Streptococcaceae. The selected isolates were subjected to further taxonomic characterization including the analysis of Gram reaction, cellular and colonial morphology, biochemical activities, and phylogenetic trees. The descriptive information on the 10 unrecorded species are provided.
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      To investigate the indigenous prokaryotic species diversity in Korea, various environmental samples from diverse ecosystems were examined taxonomically. The isolated bacterial strains were identified based on 16S rRNA gene sequences, and those exhibit...

      To investigate the indigenous prokaryotic species diversity in Korea, various environmental samples from diverse ecosystems were examined taxonomically. The isolated bacterial strains were identified based on 16S rRNA gene sequences, and those exhibiting at least 98.7% sequence similarity with known bacterial species but never reported in Korea were selected as unrecorded species. As an outcome of this study, 10 unrecorded bacterial species belonging to the phylum Firmicutes were discovered from various sources such as soil, tidal flat, fresh water, sea water, kimchi and gut of Fulvia mutica. The unrecorded species were assigned to 7 different genera of 5 families, namely Bacillus and Ornithinibacillus of Bacillaceae, Exiguobacterium of Exiguobacteriaceae, Brevibacillus and Paenibacillus of Paenibacillaceae, Staphylococcus of Staphylococcaceae, and Lactococcus of Streptococcaceae. The selected isolates were subjected to further taxonomic characterization including the analysis of Gram reaction, cellular and colonial morphology, biochemical activities, and phylogenetic trees. The descriptive information on the 10 unrecorded species are provided.

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      참고문헌 (Reference)

      1 Saitou, N., "The neighbor-joining method -a new method for reconstructing phylogenetic trees" 4 (4): 406-425, 1987

      2 Backhed, F., "The gut microbiota as an environmental factor that regulates fat storage" 101 (101): 15718-15723, 2004

      3 Rosenberg, E., "The Prokaryotes" Springer 2014

      4 Le Chatelier, E., "Richness of human gut microbiome correlates with metabolic markers" 500 (500): 541-546, 2013

      5 Kimura, M., "Rare variant alleles in the light of the neutral theory" 1 (1): 84-93, 1983

      6 Gibbons, N.E., "Proposals concerning higher taxa of bacteria" 28 (28): 1-6, 1978

      7 Felsenstein, J., "PHYLIP (phylogenetic inference package)version 3.5.1" Department of Genetics, University of Washington 1993

      8 Marchandin, H., "Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes" 60 (60): 1271-1279, 2010

      9 Wood, B., "Microbiology of Fermented Foods" Blackie 1998

      10 Ley, R.E., "Microbial ecology-Human gut microbes associated with obesity" 444 (444): 1022-1023, 2006

      1 Saitou, N., "The neighbor-joining method -a new method for reconstructing phylogenetic trees" 4 (4): 406-425, 1987

      2 Backhed, F., "The gut microbiota as an environmental factor that regulates fat storage" 101 (101): 15718-15723, 2004

      3 Rosenberg, E., "The Prokaryotes" Springer 2014

      4 Le Chatelier, E., "Richness of human gut microbiome correlates with metabolic markers" 500 (500): 541-546, 2013

      5 Kimura, M., "Rare variant alleles in the light of the neutral theory" 1 (1): 84-93, 1983

      6 Gibbons, N.E., "Proposals concerning higher taxa of bacteria" 28 (28): 1-6, 1978

      7 Felsenstein, J., "PHYLIP (phylogenetic inference package)version 3.5.1" Department of Genetics, University of Washington 1993

      8 Marchandin, H., "Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes" 60 (60): 1271-1279, 2010

      9 Wood, B., "Microbiology of Fermented Foods" Blackie 1998

      10 Ley, R.E., "Microbial ecology-Human gut microbes associated with obesity" 444 (444): 1022-1023, 2006

      11 Tamura, K., "MEGA6 : Molecular Evolutionary Genetics Analysis version 6. 0" 30 (30): 2725-2729, 2013

      12 Kim, O. S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species" 62 (62): 716-721, 2012

      13 Jeon, Y. S., "EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes" 64 (64): 689-691, 2014

      14 Ley, R.E., "Ecological and evolutionary forces shaping microbial diversity in the human intestine" 124 (124): 837-848, 2006

      15 Turnbaugh, P.J., "Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome" 3 (3): 213-223, 2008

      16 Felsenstein, J., "Confidence-limits on phylogenies - an approach using the bootstrap" 39 (39): 783-791, 1985

      17 De Vos, P., "Bergey’s manual of systematic bacteriology" Springer 2009

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      연월일 이력구분 이력상세 등재구분
      2028 평가예정 재인증평가 신청대상 (재인증)
      2022-01-01 평가 등재학술지 유지 (재인증) KCI등재
      2019-01-01 평가 등재학술지 선정 (계속평가) KCI등재
      2018-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2017-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2015-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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