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      KCI등재 SCOPUS SCIE

      Identification and expression analysis of the E2F/DP genes under salt stress in Medicago truncatula

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      https://www.riss.kr/link?id=A104427587

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      다국어 초록 (Multilingual Abstract)

      Cell cycle control in plants converges on theRb/E2F/DP pathway, which is regulated by cyclin-dependentkinases. Plants can coordinate their cell cycles duringsalt stress to benefit their growth and development. However,the mechanism underlying cell cyc...

      Cell cycle control in plants converges on theRb/E2F/DP pathway, which is regulated by cyclin-dependentkinases. Plants can coordinate their cell cycles duringsalt stress to benefit their growth and development. However,the mechanism underlying cell cycle control undersalt stress is still unclear. Here, we identified five predictedE2F/DP genes in the Medicago truncatula genome,including three E2Fs, one DP, and one DEL. The conserveddomains of the E2F/DP proteins were relativelywell conserved with those of Arabidopsis thaliana andOryza sativa. Intron/exon organization analyses indicatedthat Medtr;E2Fc and Medtr;DPa gained/lost introns in theconserved domains during recent evolutionary process.
      Furthermore, an expression analysis showed that thesegenes were expressed with varied transcription levels in allof the tissues tested. Contrasting gene expression changesin response to salt treatment in salt-tolerant versus saltsensitivegenotypes indicated that Medtr;DPa might be acandidate gene underlying the salt tolerance. This studywill contribute to the understanding of the E2F/DP transcriptionfactors in M. truncatula and of the mechanismorganizing cell cycle regulation and salt stress.

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      참고문헌 (Reference)

      1 Doolittle WF, "The origin and function of intervening sequences in DNA : a review" 130 : 915-928, 1987

      2 International Rice Genome Sequencing Project, "The map-based sequence of the rice genome" 436 : 793-800, 2005

      3 Harbour JW., "The Rb/E2F pathway, expanding roles and emerging paradigms" 14 : 2393-2409, 2000

      4 Mariconti L., "The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants" 277 : 9911-9919, 2002

      5 He M., "Statistical characteristics of eukaryotic intron database" 4 : 362-366, 2006

      6 Ramirez-Parra E., "Role of an atypical E2F transcription factor in the control ofArabidopsis cell growth and differentiation" 16 : 2350-2363, 2004

      7 Dong Ding, "Revelation of the early responses of salt tolerance in maize via SSH libraries" 한국유전학회 34 (34): 265-273, 2012

      8 Grzebelus D., "Population dynamic of miniature inverted-repeat transposable elements, MITEs in Medicago trunctula" 448 : 214-220, 2009

      9 Lee TH., "PGDD, a database of gene and genome duplication in plants" 41 (41): D1152-D1158, 2012

      10 Barroˆco RM., "Novel complexes of cyclin-dependent kinases and a cyclin-like protein from Arabidopsis thaliana with a function unrelated to cell division" 60 : 401-412, 2003

      1 Doolittle WF, "The origin and function of intervening sequences in DNA : a review" 130 : 915-928, 1987

      2 International Rice Genome Sequencing Project, "The map-based sequence of the rice genome" 436 : 793-800, 2005

      3 Harbour JW., "The Rb/E2F pathway, expanding roles and emerging paradigms" 14 : 2393-2409, 2000

      4 Mariconti L., "The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants" 277 : 9911-9919, 2002

      5 He M., "Statistical characteristics of eukaryotic intron database" 4 : 362-366, 2006

      6 Ramirez-Parra E., "Role of an atypical E2F transcription factor in the control ofArabidopsis cell growth and differentiation" 16 : 2350-2363, 2004

      7 Dong Ding, "Revelation of the early responses of salt tolerance in maize via SSH libraries" 한국유전학회 34 (34): 265-273, 2012

      8 Grzebelus D., "Population dynamic of miniature inverted-repeat transposable elements, MITEs in Medicago trunctula" 448 : 214-220, 2009

      9 Lee TH., "PGDD, a database of gene and genome duplication in plants" 41 (41): D1152-D1158, 2012

      10 Barroˆco RM., "Novel complexes of cyclin-dependent kinases and a cyclin-like protein from Arabidopsis thaliana with a function unrelated to cell division" 60 : 401-412, 2003

      11 Rakocevic A., "MERE1, a low-copy-number copia-type retroelement in Medicago truncatula active during tissue culture" 151 : 1250-1263, 2009

      12 Berckmans B., "Light-dependent regulation of DEL1 is determined by the antagonisitix axtion of E2Fb and E2Fc" 157 : 1440-1451, 2011

      13 Wang Y., "Lentiviral transgenic microRNA-based shRNA suppressed mouse cytochromosome P450 3A (CYP3A) expression in a dose-dependent and inheritable manner" 7 (7): e30560-, 2012

      14 Roy SW., "Large-scale intron conservation and orderof-magnitude variation in intron loss/gain rates in apicomplexan evolution" 16 : 1270-1275, 2006

      15 Sozzani R., "Interplay between Arabidopsis activating factors E2Fb and E2Fa in cell cycle progression and development" 140 : 1355-1366, 2006

      16 Kosugi S., "Interaction of the Arabidopsis E2F and DP proteins confers their concomitant nuclear translocation and transactivation" 128 : 833-843, 2002

      17 Huang YW., "Increased expression of the rice C-type cyclin-dependent protein kinase gene, Orysa;CDKC;1, in response to salt stress" 46 : 71-81, 2008

      18 Yoshida T., "Importance of gene duplication in the evolution of genomic imprinting revealed by molecular evolutionary analysis of the Type I MADS-box gene family in Arabidopsis species" 8 : e73588-, 2013

      19 Li H., "Histone acetylation associated up-regulation of the cell wall related genes is involved in salt stress induced maize root swelling" 14 : 105-, 2014

      20 Guo J., "Genome-wide identification and expression analysis of rice cell cycle genes" 64 : 349-360, 2007

      21 Bisova K., "Genome-wide annotation and expression profiling of cell cycle regulatory genes in Chlamydomonas reinhardtii" 137 : 475-491, 2005

      22 Liu Q., "Genome-wide and molecular evolution analyses of the phospholipase D gene family in Poplar and Grape" 10 : 117-, 2010

      23 Vandepoele K., "Genome-wide analysis of core cell cycle genes in Arabidopsis" 14 : 903-916, 2002

      24 Blanc G., "Extensive duplication and reshuffling in the Arabidopsis genome" 12 : 1093-1101, 2000

      25 Burssens S., "Expression of cell cycle regulatory genes and morphological alterations in response to salt stress in Arabidopsis thaliana" 211 : 632-640, 2000

      26 Logan N., "E2F-7 : a distinctive E2F family member with an unusual organization of DNA-binding domains" 23 : 5138-5150, 2004

      27 Kosugi S., "E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue specific expression of rice and tobacco proliferating cell nuclear antigen promoters" 29 : 45-59, 2002

      28 de Lorenzo L., "Differential expression of the TFIIIA regulatory pathway in response to salt stress between Medicago truncatula genotypes" 145 : 1521-1532, 2007

      29 Audemard E., "Detecting long tandem duplications in genomic sequences" 13 : 83-, 2012

      30 Huang XY., "Cyclin-Dependent kinase G1 is associated with the spliceosome to regulate callose synthase5 splicing and pollen wall formation in Arabidopsis" 25 : 637-648, 2013

      31 Bennett MD., "Comparisons with Caenorhabditis, *100 Mb and Drosophila, *175 Mb using flow cytometry show genome size in Arabidopsis to be *175 Mb and thus *25 % larger than the Arabidopsis genome initiative of *125 Mb" 91 : 1-11, 2003

      32 Zahaf O., "Comparative transcriptomic analysis of salt adaptation in roots of contrasting Medicago truncatula genotypes" 5 : 1068-1081, 2012

      33 Christensen J., "Characterization of E2F8, a novel E2F-like cell-cycle regulated repressor of E2F-activated transcription" 33 : 5458-5470, 2005

      34 West G., "Cell cycle modulation in the response of the primary root of Arabidopsis to salt stress" 135 : 1050-1058, 2004

      35 Ramirez-Parra E., "Cell cycle control and plant development" Blackwell Publishing 138-163, 2007

      36 del Pozo JC., "Arabidopsis E2Fc functions in cell division and is degraded by the UbiquitinSCFAtSKP2. pathway in response to light" 14 : 3057-3071, 2002

      37 Li D., "An expression database for roots of the model legume Medicago truncatula under salt stress" 10 : 517-, 2009

      38 Bucciarelli B., "A standardized method for analysis of Medicago truncatula phenotypic development" 142 : 207-219, 2006

      39 Stevaux O., "A revised picture of the E2F transcriptional network and RB function" 14 : 684-691, 2002

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      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
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      2002-01-01 평가 등재후보학술지 유지 (등재후보1차) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.51 0.12 0.38
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.32 0.27 0.258 0.02
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