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      세포벽 분해 관련 효소의 생산균주 분리 및 CMCase의 특성

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      https://www.riss.kr/link?id=A76263835

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      국문 초록 (Abstract)

      CMCase를 생산하는 Klebsiella sp. Sc를 부산 인근의 토양에서 분리하였다. 이 균주는 16S rDNA와 RNA polymerase B subunit (rpoB) 유전자의 유전적 계통 분석을 통하여 동정을 시행하였다. 그 결과 Klebsiella sp....

      CMCase를 생산하는 Klebsiella sp. Sc를 부산 인근의 토양에서 분리하였다. 이 균주는 16S rDNA와 RNA polymerase B subunit (rpoB) 유전자의 유전적 계통 분석을 통하여 동정을 시행하였다. 그 결과 Klebsiella sp. 속들의 균주들과 99% 이상의 상동성을 나타내었다. CMCase 유전자는 Sc의 게놈라이브러리를 구축하여 찾았다. CMCase 유전자는 37,666 Da의 분자량을 가지는 333개의 아미노산을 암호화하고 있는 1,002개의 뉴클레오티드들로 구성된 것으로 밝혀졌다. 추정된 CMCase의 단백질 서열은 Cellulomonas uda와 단백질과 95%의 identity와 97%의 positive를 가지는 것으로 나타났으며, Erwinia chrysanthemi와는 각각 58%와 72%를 가지는 것으로 나타났다. 그리고 CMCase는 ASDGDTLIAWALLRAQ KQW와 같은 보존 영역을 가지고 있었는데, 이는 glycosyl hydrolase family 8의 보존영역(A-[ST]-D-[AG]-D-X(2)-[IM]-A-[SA]-[LIVM]-[LIVMG]-A-X(3)-[FW])와 일치하는 것으로 나타났다. 이는 Klebsiells sp. Sc의 CMCase는 glycosyl hydrolase family 8에 속한다는 것을 나타낸다.

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      다국어 초록 (Multilingual Abstract)

      A CMCase-producing bacterium, Klebsiella sp. Sc, was isolated from Busan area's soil sample. This strain was identified on the basis of phylogenetic analysis of the 16S rDNA and rpoB (RNA polymerase B subunit) sequences. The gene encoding CMCase was c...

      A CMCase-producing bacterium, Klebsiella sp. Sc, was isolated from Busan area's soil sample. This strain was identified on the basis of phylogenetic analysis of the 16S rDNA and rpoB (RNA polymerase B subunit) sequences. The gene encoding CMCase was cloned by genome library. The CMCase gene consisted of an open reading frame of 1,002 nucleotides and encodes 333 amino acids with a deduced molecular weight of 37,666 Da. The deduced amino acid sequence of the CMCase from Klebsiella sp. exhibits 95% identities and 97% positives to those from Cellulomonas uda and 58% identities and 72% positives to those from Erwinia chrysanthemi. The CMCase contain a conserved motif with the consensus sequence, ASDGDTLI AWALLRAQKQW. This result shows CMCase protein from Klebsiella sp. Sc belongs to glycoside hydrolase family 8, A-[ST]-D-[AG]-D-X(2)-[IM]-A-[SA]-[LIVM]-[LIVMG]-A-X(3)-[FW].

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      목차 (Table of Contents)

      • 서론
      • 재료 및 방법
      • 결과 및 고찰
      • 요약
      • 감사의 말
      • 서론
      • 재료 및 방법
      • 결과 및 고찰
      • 요약
      • 감사의 말
      • References
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      참고문헌 (Reference)

      1 Mollet, C., "rpoB sequence analysis as a novel basis for bacterial identification" 26 : 1005-1011, 1997

      2 Miller,L, "Use of dinitrosalicylic acid reagent for determination of reducing sugar" 31 : 208-218, 1959

      3 Zogaj, X., "The multicullular porphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix" 39 : 1452-1463, 2001

      4 Alzari, P. M, "The crystal structure of endoglucanase CelA, a family 8 glycosyl hydrolase from Clostridium thermocellum" 4 : 265-275, 1996

      5 Thompson, J. D., "The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools" 24 : 4876-4882, 1997

      6 Nakamura, K., "Sequence of a cellulase of Cellulomonas uda CB4" 4 : 247-254, 1986

      7 Beguin, P., "Sequence of a cellulase gene of the thermophilic bacterium Clostridium thermocellum" 162 : 102-105, 1985

      8 Guiseppi, A., "Sequence analysis of the cellulase-encoding celY gene of Erwinia chrysanthemi: a possible case of interspecies gene transfer" 106 : 109-114, 1991

      9 Bagnara-Tardif, C., "Sequence analysis of a gene cluster encoding cellulases from Clostridium cellulolyticum" 119 : 17-28, 1992

      10 Ozaki, K, "Purification and properties of an acid endo-1,4-beta-glucanase from Bacillus sp. KSM-330" 137 : 41-48, 1991

      1 Mollet, C., "rpoB sequence analysis as a novel basis for bacterial identification" 26 : 1005-1011, 1997

      2 Miller,L, "Use of dinitrosalicylic acid reagent for determination of reducing sugar" 31 : 208-218, 1959

      3 Zogaj, X., "The multicullular porphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix" 39 : 1452-1463, 2001

      4 Alzari, P. M, "The crystal structure of endoglucanase CelA, a family 8 glycosyl hydrolase from Clostridium thermocellum" 4 : 265-275, 1996

      5 Thompson, J. D., "The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools" 24 : 4876-4882, 1997

      6 Nakamura, K., "Sequence of a cellulase of Cellulomonas uda CB4" 4 : 247-254, 1986

      7 Beguin, P., "Sequence of a cellulase gene of the thermophilic bacterium Clostridium thermocellum" 162 : 102-105, 1985

      8 Guiseppi, A., "Sequence analysis of the cellulase-encoding celY gene of Erwinia chrysanthemi: a possible case of interspecies gene transfer" 106 : 109-114, 1991

      9 Bagnara-Tardif, C., "Sequence analysis of a gene cluster encoding cellulases from Clostridium cellulolyticum" 119 : 17-28, 1992

      10 Ozaki, K, "Purification and properties of an acid endo-1,4-beta-glucanase from Bacillus sp. KSM-330" 137 : 41-48, 1991

      11 Lee, Y. J., "Purification and characterization of cellulase produced by Bacillus amyoliquefaciens DL-3 utilizing rice hull" 99 : 378-386, 2008

      12 Bueno, A., "Nucleotide sequence of a 1,3-1,4-β-glucanase encoding gene in Bacillus circulans WL-12" 18 : 4248-, 4248

      13 Arlet, G. M., "Molecular epidemiology of Klebsiella pneumoniae strains that produce SHV-4 lactamase and which were isolated in 14 French hospitals" 32 : 2553-2558, 1994

      14 Sambrook, J., "Molecular cloning. A laboratory manual" Cold Spring Harbor Laboratory Press 1989

      15 Ozaki, K., "Molecular cloning and nucleotide sequence of the gene encoding an endo-1,4-beta-glucanase from Bacillus sp. KSM-330" 137 : 2299-2305, 1991

      16 Beguin,P, "Molecular biology of cellulose degradation" 44 : 219-248, 1990

      17 Ju-Soon Yoo, "Molecular Cloning and Characterization of CMCase gene (celC) from Salmonella typhimurium UR" 한국미생물학회 42 (42): 205-210, 2004

      18 Li, X, "Klebsiella singaporensis sp. nov., a novel isomaltulose-producing bacterium" 54 : 2131-2136, 2004

      19 Perna, N. T., "Genome sequence of enterohaemorrhagic Escherichia coli O157:H7" 409 : 529-533, 2001

      20 Gilkes, N. R., "Domains in microbial beta-1,4-glycanases: sequence conservation, function, and enzyme families" 55 : 303-315, 1991

      21 Parkhill, J., "Complete genome sequence of a multiple drug resitant Salmonela enterica serovar Typhi CT 18" 413 : 848-852, 2001

      22 da Silva, A. C. R, "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities" 417 : 459-463, 2002

      23 Lee, Y. S., "Cloning, purification, and characterization of chitosanase from Bacillus sp. DAU101" 73 : 113-121, 2006

      24 Park, Y. W, "Cloning of the Escherichia coli endo- 1,4-D-glucanase gene and identification of its product" 261 : 236-241, 1999

      25 Han, S. J., Y, "Characterization of a biofunctional cellulase and its structural gene. The cell gene of Bacillus sp. D04 has exo- and endoglucanase activity" 270 : 26012-26019, 1995

      26 Henrissat, B., "Cellulase families revealed by hydrophobic cluster analysis" 81 : 83-95, 1989

      27 Thompson, J. D., "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice" 22 : 4673-4680, 1994

      28 Eriksson, K. E, "Biosynthesis and biodegradation of wood components" Academic Press 469-503, 1985

      29 Guerin, D. M. A., "Atomic (0.94Å) resolution structure of an inverting glycosidase in complex with substrate" 316 : 1061-1069, 2002

      30 Spiers, A. J., "Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. genetic and phenotypic bases of wrinkly spreader fitness" 161 : 33-46, 2002

      31 Standal, R., "A new gene required for cellulose production and a gene encoding cellulolytic activity in Acetobacter xylinum are colocalized with the bcs operon" 176 : 665-672, 1994

      32 Henrissat, B, "A classification of glycosyl hydrolases based on amino acid sequence similarities" 280 : 309-316, 1991

      33 Cho, K. M., "A cel44C-man26A gene of endophytic Paenibacillus polymyxa GS01 has multi-glycosyl hydrolases in two catalytic domains" 73 : 618-630, 2006

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      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2027 평가예정 재인증평가 신청대상 (재인증)
      2021-01-01 평가 등재학술지 유지 (재인증) KCI등재
      2018-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2015-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2011-08-03 학술지명변경 외국어명 : Korean Journal of Life Science -> Journal of Life Science KCI등재
      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2009-01-01 평가 등재학술지 유지 (등재유지) KCI등재
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      2004-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2003-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.37 0.37 0.42
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.43 0.43 0.774 0.09
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