Batch Adsorptive Removal of Copper Ions in Aqueous Solutions by Ion Exchange Resins : 1200H and IRN97H

Rengaraj, Selvaraj,Kim, Younghun,Joo, Cheol Kyun,Choi, Kyunghee,Yi, Jongheop 한국화학공학회 2004 Korean Journal of Chemical Engineering Vol.21 No.1

The removal of copper from aqueous solution by ion exchange resins, such as 1200H and IRN97H, is described. Effect of initial metal ion concentration, agitation time and pH on adsorption capacities of ion exchange resins was investigated in a batch mode. The adsorption process, which is pH dependent, shows maximum removal of copper in the pH range 2-7 for an initial copper concentration of 10㎎/L. The experimental data have been analyzed by using the Freundlich, Langmuir, Redlich-Peterson, Temkin and Dubinin-Radushkevich isotherm models. The batch sorption kinetics have been tested for a first-order, pseudo-first order and pseudo-second order kinetic reaction models. The rate constants of adsorption for all these kinetic models have been calculated. Results showed that the intraparticle diffusion and initial sorption into resins of Cu(Ⅱ) in the ion exchange resins was the main rate limiting step. The uptake of copper by the ion exchange resins was reversible and thus has good potential for the removal/recovery of copper from aqueous solutions. We conclude that such ion exchange resins can be used for the efficient removal of copper from water and wastewater.

Expression analysis of cytosolic DNA-sensing pathway genes in the intestinal mucosal layer of necrotic enteritis-induced chicken

Rengaraj, D.,Truong, A.D.,Lee, S.H.,Lillehoj, H.S.,Hong, Y.H. Elsevier 2016 Veterinary immunology and immunopathology Vol.170 No.-

<P>Necrotic enteritis (NE) is a serious problem to the poultry farms, which report NE outbreaks more than once per year, as a result of the inappropriate use of antibiotics in the feed. The NE affected bird die rapidly as a result of various pathophysiological complications in the intestine and immune system. Also, several studies have reported that the genes exclusively related to intestine and immune functions are significantly altered in response to NE. In this study, NE was induced in two genetically disparate chicken lines that are resistant (line 6.3) and sensitive (line 7.2) to avian leukosis and Marek's disease. The intestinal mucosal layer was collected from NE-induced and control chickens, and subjected to RNA-sequencing analysis. The involvement of differentially expressed genes in the intestinal mucosal layer of line 6.3 and 7.2 with the immune system-related pathways was investigated. Among the identified immune system related pathways, a candidate pathway known as chicken cytosolic DNA-sensing pathway (CDS pathway) was selected for further investigation. RNA-sequencing and pathway analysis identified a total of 21 genes that were involved in CDS pathway and differentially expressed in the intestinal mucosal layer of lines 6.3 and 7.2. The expression of CDS pathway genes was further confirmed by real-time qPCR. In the results, a majority of the CDS pathway genes were significantly altered in the NE-induced intestinal mucosal layer from lines 6.3 and 7.2. In conclusion, our study indicate that NE seriously affects several genes involved in innate immune defense and foreign DNA sensing mechanisms in the chicken intestinal mucosal layer. Identifying the immune genes affected by NE could be an important evidence for the protective immune response to NE-causative pathogens. (C) 2015 Elsevier B.V. All rights reserved.</P>

Testis-specific novel transcripts in chicken: in situ localization and expression pattern profiling during sexual development.

Rengaraj, Deivendran,Kim, Duk Kyung,Zheng, Ying Hui,Lee, Sang In,Kim, Heebal,Han, Jae Yong Society for the Study of Reproduction [etc.] 2008 BIOLOGY OF REPRODUCTION Vol.79 No.3

<P>Tissue-specific novel transcripts expressed during sexual development were examined by RT-PCR, quantitative RT-PCR (qRT-PCR), and in situ hybridization to provide data for chicken genomics. Public databases for transcript data have been constructed with known and unknown sequences of various tissues from different animals. However, the expression patterns and functions of the transcripts are less known. From the The Institute for Genomics Research Gallus gallus library, we examined 291 tentative consensus (TC) sequences that assembled 100% with transcripts by RT-PCR during male and female sexual development from Embryonic Day 6 to 25 wk of age. We found 85 TC sequences that were specific to testicular development; of these, 43 TC sequences were exclusively upregulated in 25-wk-old testis. Another 52 TC sequences were not specific to one tissue, but occurred in the testis and ovary at different developmental ages. Twelve testis-specific TC sequences upregulated in 25-wk-old testis were randomly selected and further examined with qRT-PCR. For precise localization, these 12 testis-specific TC sequences were examined by in situ hybridization with 25-wk-old adult testis. Six TC sequences were strongly expressed in secondary spermatocytes and haploid spermatids until spermatozoa release. Another six TC sequences were differentially expressed in the adluminal compartment of seminiferous tubules. Among the testis-specific TC sequences, TC120901 is a known gene, phospholipase C, zeta (PLCZ1). Our data provide potential insight into gene expression and genomic information on novel transcripts that are important to avian reproduction.</P>

CdS microspheres composed of nanocrystals and their photocatalytic activity.

Rengaraj, Selvaraj,Jee, Sun Hee,Venkataraj, Selvaraj,Kim, Younghun,Vijayalakshmi, Selvaraj,Repo, Eveliina,Koistinen, Arto,Sillanp??, Mika American Scientific Publishers 2011 Journal of nanoscience and nanotechnology Vol.11 No.3

<P>A simple and template-free solution phase synthesis method has been developed for the preparation of novel CdS hollow microspheres using cadmium nitrate and thioacetamide precursors. In this manuscript, we demonstrate that process parameters such as the reaction time, precursor ratio, and reaction temperature strongly influence the morphology of the final product. The synthesized products have been characterized by a variety of methods, including X-ray powder diffraction (XRD), Raman spectroscopy, high-resolution scanning electron microscopy (HR-SEM), high-resolution transmission electron microscopy (HRTEM), energy-dispersive X-ray diffraction (EDX) analysis, X-ray photoelectron spectroscopy (XPS), and UV-visible diffused reflectance spectroscopy (UV-DRS). XRD analysis confirmed the cubic structure of the CdS microspheres, which has also been further supported by Raman spectroscopy. The HR-SEM measurements revealed the spherical morphology of the CdS microspheres which has been evolved by the oriented aggregation of the primary CdS nanocrystals. The TEM measurements confirmed the hollow shell-like structure of the spheres; the formation of their hollow interiors can be explained by the Ostwald ripening mechanism. UV-DRS studies showed that the band gap of the CdS microspheres increased with increasing cadmium-nitrate-to-thioacetamide ratio. Furthermore, studies of photocatalytic activity revealed that the synthesized CdS hollow microspheres exhibit an excellent photocatalytic performance in rapidly degrading methyl tert-butyl ether (MTBE) in aqueous solution under visible-light illumination. These results suggest that CdS microspheres will be an interesting candidate for photocatalytic detoxification studies under visible light radiation.</P>

Expression and regulation of avian beta-defensin 8 protein in immune tissues and cell lines of chickens

Rengaraj, Deivendran,Truong, Anh Duc,Lillehoj, Hyun S.,Han, Jae Yong,Hong, Yeong Ho Asian Australasian Association of Animal Productio 2018 Animal Bioscience Vol.31 No.9

Objective: Defensins are a large family of antimicrobial peptides and components of the innate immune system that invoke an immediate immune response against harmful pathogens. Defensins are classified into alpha-, beta-, and theta-defensins. Avian species only possess beta-defensins (AvBDs), and approximately 14 AvBDs (AvBD1-AvBD14) have been identified in chickens to date. Although substantial information is available on the conservation and phylogenetics, limited information is available on the expression and regulation of AvBD8 in chicken immune tissues and cells. Methods: We examined AvBD8 protein expression in immune tissues of White Leghorn chickens (WL) by immunohistochemistry and quantitative reverse transcription-polymerase chain reaction (RT-qPCR). In addition, we examined AvBD8 expression in chicken T-, B-, macrophage-, and fibroblast-cell lines and its regulation in these cells after lipopolysaccharide (LPS) treatment by immunocytochemistry and RT-qPCR. Results: Our results showed that chicken AvBD8 protein was strongly expressed in the WL intestine and in macrophages. AvBD8 gene expression was highly upregulated in macrophages treated with different LPS concentrations compared with that in T- and B-cell lines in a time-independent manner. Moreover, chicken AvBD8 strongly interacted with other AvBDs and with other antimicrobial peptides as determined by bioinformatics. Conclusion: Our study provides the expression and regulation of chicken AvBD8 protein in immune tissues and cells, which play crucial role in the innate immunity.

Identification and expression analysis of alpha tocopherol transfer protein in chickens fed diets containing different concentrations of alpha-tocopherol

Rengaraj, Deivendran,Truong, Anh Duc,Hong, Yeojin,Pitargue, Franco Martinez,Kim, Jong Hyuk,Hong, Yeong Ho,Han, Jae Yong,Kil, Dong Yong Elsevier 2019 Research in veterinary science Vol.123 No.-

<P><B>Abstract</B></P> <P>Among the eight forms of vitamin E, the liver preferentially releases α-tocopherol into the circulation and it is distributed to the non-liver tissues. In the hepatocytes, alpha tocopherol transfer protein (TTPA) specifically recognizes α-tocopherol with 2<I>R</I>-configuration and facilitates its intracellular transfer. The identification and characterization of TTPA expression have not been demonstrated in avian species. Therefore, the objectives of this study were to identify avian TTPAs, to compare the sequence conservation, phylogenetic relationship, protein interactions, and disease associations of chicken TTPA with those of human and vertebrate TTPA, and to characterize the tissue expression of the TTPA gene in chickens fed diets supplemented with different amounts of α-tocopherol. Our results suggest that the chicken TTPA was highly conserved with the human and vertebrate TTPA, and consisted of a cellular retinaldehyde binding protein and TRIO guanine exchange factor (CRAL_TRIO) domain. Feeding diets supplemented with increasing amounts of α-tocopherol (25 IU/Kg, 50 IU/Kg, or 100 IU/Kg) to broiler chickens had no effects on growth performance compared with feeding basal diets containing no supplemental α-tocopherol. The expression of TTPA gene was detected high in the liver of chickens in response to dietary α-tocopherol concentrations, whereas its expression was very low or undetectable in the non-liver tissues. In conclusion, the chicken TTPA protein sequence is highly conserved with other avian and vertebrate TTPA protein sequences. The higher expression of TTPA gene in the chicken liver in response to dietary α-tocopherol concentrations may suggest its crucial role in transporting α-tocopherol in the chicken liver.</P> <P><B>Highlights</B></P> <P> <UL> <LI> 21-day chickens were fed diets with 0–100 IU DL-α-tocopheryl acetate for 14-days. </LI> <LI> Dietary α-tocopherol levels had no effects on growth performance of chickens. </LI> <LI> TTPA gene expression was high in the liver of chickens fed with α-tocopherol. </LI> <LI> Higher level of TTPA in the chicken liver suggest its role in α-tocopherol transfer. </LI> </UL> </P>

Bioinformatics Annotation of Human Y Chromosome-Encoded Protein Pathways and Interactions

Rengaraj, Deivendran,Kwon, Woo-Sung,Pang, Myung-Geol American Chemical Society 2015 JOURNAL OF PROTEOME RESEARCH Vol.14 No.9

<P>We performed a comprehensive analysis of human Y chromosome-encoded proteins, their pathways, and their interactions using bioinformatics tools. From the NCBI annotation release 107 of human genome, we retrieved a total of 66 proteins encoded on Y chromosome. Most of the retrieved proteins were also matched with the proteins listed in the core databases of the Human Proteome Project including neXtProt, PeptideAtlas, and the Human Protein Atlas. When we examined the pathways of human Y-encoded proteins through KEGG database and Pathway Studio software, many of proteins fall into the categories related to cell signaling pathways. Using the STRING program, we found a total of 49 human Y-encoded proteins showing strong/medium interaction with each other. While using the Pathway studio software, we found that a total of 16 proteins interact with other chromosome-encoded proteins. In particular, the SRY protein interacted with 17 proteins encoded on other chromosomes. Additionally, we aligned the sequences of human Y-encoded proteins with the sequences of chimpanzee and mouse Y-encoded proteins using the NCBI BLAST program. This analysis resulted in a significant number of orthologous proteins between human, chimpanzee, and mouse. Collectively, our findings provide the scientific community with additional information on the human Y chromosome-encoded proteins.</P><P><B>Graphic Abstract</B> <IMG SRC='http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jprobs/2015/jprobs.2015.14.issue-9/acs.jproteome.5b00491/production/images/medium/pr-2015-00491g_0007.gif'></P><P><A href='http://pubs.acs.org/doi/suppl/10.1021/pr5b00491'>ACS Electronic Supporting Info</A></P>

Effects of Dietary Vitamin E on Fertility Functions in Poultry Species

Rengaraj, Deivendran,Hong, Yeong Ho MDPI 2015 INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES Vol.16 No.5

<P>Vitamin E is found in high quantities in vegetable oils. Although vitamin E has multiple functions in humans and animals, its key function is protecting cells from oxidative damage. Since its discovery, several studies have demonstrated that vitamin E deficiency causes impaired fertility in humans and lab animals. However, the effects of vitamin E deficiency or of its supplementation on the fertility of farm animals, particularly on poultry, are less well studied. Therefore, a comprehensive review of the effects of dietary vitamin E on the fertility of poultry species is needed in order to understand the beneficial role of vitamin E in the maintenance of sperm and egg qualities. Based on the observations reviewed here, we found that a moderate amount of vitamin E in poultry diet significantly protects semen/sperm qualities in male birds and egg qualities in female birds via decreasing the lipid peroxidation in semen/sperms and eggs. This review provides an overall understanding of the effects of dietary vitamin E on fertility functions in poultry species.</P>

Electrodeposition of flower-like nickel oxide on CVD-grown graphene to develop an electrochemical non-enzymatic biosensor

Rengaraj, Arunkumar,Haldorai, Yuvaraj,Kwak, Cheol Hwan,Ahn, Seungbae,Jeon, Ki-Joon,Park, Seok Hoon,Han, Young-Kyu,Huh, Yun Suk The Royal Society of Chemistry 2015 Journal of Materials Chemistry B Vol.3 No.30

<P>We demonstrated a non-enzymatic cholesterol sensor based on a nickel oxide (NiO) and high quality graphene composite for the first time. Graphene was grown by a chemical vapor deposition technique (CVD). The nanocomposite was fabricated through the electrodeposition of nickel hydroxide onto the surface of the CVD-grown graphene, which was followed by thermal annealing. The successful formation of the NiO/graphene composite was confirmed by X-ray diffraction, X-ray photoelectron spectroscopy, and Raman spectroscopy. The deposition of flower-like NiO onto the graphene surface was confirmed by scanning electron microscopy. Electrochemical analyses were conducted to investigate the characteristics of the sensor during the detection of cholesterol. The sensor showed a high sensitivity of 40.6 mA μM<SUP>−1</SUP> cm<SUP>−2</SUP>, a rapid response time of 5 s, and a low detection of limit of 0.13 μM. We also investigated the effects of common interfering substances on the ability of the sensor to detect cholesterol. Furthermore, we successfully determined the cholesterol in a milk sample using the developed sensor. The composite electrode exhibited excellent detection of cholesterol with good reproducibility and long-term stability owing to the combined effects of NiO and graphene.</P>

Regulation of glucose phosphate isomerase by the 3'UTR-specific miRNAs miR-302b and miR-17-5p in chicken primordial germ cells.

Rengaraj, Deivendran,Park, Tae Sub,Lee, Sang In,Lee, Bo Ram,Han, Beom Ku,Song, Gwonhwa,Han, Jae Yong Society for the Study of Reproduction [etc.] 2013 BIOLOGY OF REPRODUCTION Vol.89 No.2

<P>Glucose phosphate isomerase (GPI) involves in the reversible isomerization of glucose-6-phosphate to fructose-6-phosphate in glucose pathways. Because glucose metabolism is crucial for the proliferation and differentiation of embryonic stem and germ cells, reducing GPI expression may affect the characteristic features of these cells. MicroRNAs (miRNAs) have been shown to regulate genes. In the present study, we investigated the regulation of chicken GPI by its predicted miRNAs. We determined the expression patterns of seven GPI 3'-untranslated region (3'UTR)-targeting miRNAs, including the gga-miR-302 cluster, gga-miR-106, gga-miR-17-5p, and gga-miR-20 cluster in chicken primordial germ cells (PGCs), compared with GPI mRNA. Among the miRNAs, gga-miR-302b, gga-miR-302d, and gga-miR-17-5p were expressed at lower levels than GPI mRNA. The remaining four miRNAs-gga-miR-302c, gga-miR-106, gga-miR-20a, and gga-miR-20b-were expressed at higher levels than the expression of GPI mRNA. Next, we cotransfected four candidate miRNAs-gga-miR-302b, gga-miR-106, gga-miR-17-5p, and gga-miR-20a-with GPI 3'UTR into 293FT cells by dual fluorescence reporter assay. Overexpression of gga-miR-302b and gga-miR-17-5p miRNAs in 293FT cells significantly downregulated GPI expression, whereas the other two miRNAs had no effect. Then, knockdown and overexpression of these four candidate miRNAs were performed by RNA interference assay to regulate GPI in PGCs. In the RNA interference assay, the expression of GPI was greatly regulated by gga-miR-302b and gga-miR-17-5p. Finally, we examined the effects of GPI regulation on PGC proliferation and migration. Our results suggested that the regulation of GPI by gga-miR-302b and gga-miR-17-5p affected PGCs proliferation. However, regulation of GPI using these two miRNAs did not affect the migration of PGCs into embryonic gonads.</P>