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        Diversity in Betasatellites Associated with Cotton Leaf Curl Disease During Source-To-Sink Movement Through a Resistant Host

        Khan, Iftikhar Ali,Akhtar, Khalid Pervaiz,Akbar, Fazal,Hassan, Ishtiaq,Amin, Imran,Saeed, Muhammad,Mansoor, Shahid The Korean Society of Plant Pathology 2016 Plant Pathology Journal Vol.32 No.1

        Cotton leaf curl is devastating disease of cotton characterized by leaf curling, vein darkening and enations. The disease symptoms are induced by DNA satellite known as Cotton leaf curl Multan betasatellite (CLCuMuB), dominant betasatellite in cotton but another betasatellite known as Chili leaf curl betasatellite (ChLCB) is also found associated with the disease. Grafting experiment was performed to determine if host plant resistance is determinant of dominant population of betasatellite in cotton (several distinct strains of CLCuMuB are associated with the disease). Infected scion of Gossypium hirsutum collected from field (the source) was grafted on G. arboreum, a diploid cotton species, resistant to the disease. A healthy scion of G. hirsutum (sink) was grafted at the top of G. arboreum to determine the movement of virus/betasatellite to upper susceptible scion of G. hirsutum. Symptoms of disease appeared in the upper scion and presence of virus/betasatellite in the upper scion was confirmed via molecular techniques, showing that virus/betasatellite was able to move to upper scion through resistant G. arboreum. However, no symptoms appeared on G. arboreum. Betasatelites were cloned and sequenced from lower scion, upper scion and G. arboreum which show that the lower scion contained both CLCuMuB and ChLCB, however only ChLCB was found in G. arboreum. The upper scion contained CLCuMuB with a deletion of 78 nucleotides (nt) in the non-coding region between Arich sequence and ${\beta}C1$ gene and insertion of 27 nt in the middle of ${\beta}C1$ ORF. This study may help in investigating molecular basis of resistance in G. arboreum.

      • KCI등재

        AVO-derived attributes to differentiate reservoir facies from non-reservoirs facies and fluid discrimination in Penobscot area, Nova Scotia

        Perveiz Khalid,Nisar Ahmed,Khalid Amin Khan,Mustansar Naeem 한국지질과학협의회 2015 Geosciences Journal Vol.19 No.3

        The discrimination of hydrocarbon (gas or oil) facies from non-hydrocarbon (wet sands) facies is an important goal in quantitative seismic interpretation and reservoir estimation. The differentiation of hydrocarbon facies from non-hydrocarbon in Mississauga Formation of early Cretaceous in Penobscot area is a difficult task due to smaller net pay thickness and shaly sand intervals. Based on seismic interpretation and wireline logs, five sand plays are identified in the middle of Mississauga Formation. Four sands have hydrocarbons while top of sand 5 represents hydrocarbon water transition zone. Among these four, the pay sand 4 is analyzed for hydrocarbon facies. Wireline logs and seismic data are used to derive various amplitude versus offset (AVO) based attributes such as: acoustic (IP) and shear (IS) impedances, Poisson ratio (σ) etc. Further, the combined attributes e.g., product of Lamé parameters (μ, λ) with density (ρ), their ratio (λ/μ), difference between bulk modulus (K) and shear modulus (μ), Δμρ/μρ, Δ(λ/μ + 2)(λ/μ + 2) and the pore space modulus (ΚP) are also analyzed to find out the best attribute as a hydrocarbon facies discriminator from non-hydrocarbon facies in the shale imbedded pay sand 4 of Mississauga Formation. First, petrophysical parameters such as P and S wave impedances, Lamé’s parameters etc. are extracted from log data. Then, appropriate pairs of seismic attributes are crossplotted so that the hydrocarbon and non-hydrocarbon facies cluster together for quick identification and interpretation. Gamma ray index is crossplotted against spontaneous potential log to mark sand and shale facies. Fluid substitution modeling for various fluid types and saturation is also done which demonstrate that the cross-plots between different rock physics parameters can be used to distinguish between reservoir fluids. Our analysis reveals single P-wave based attributes are not sufficient to discriminate fluids thus the use of multi-attributes such as KP, λρ and Κ-μ is more effective to discriminate the hydrocarbon and non-hydrocarbon facies. The analysis of these cross-plots was done to map the reservoir sands and the hydrocarbon-water contact.

      • KCI등재

        Diversity in Betasatellites Associated with Cotton Leaf Curl Disease During Source-To-Sink Movement Through a Resistant Host

        Iftikhar Ali Khan,Khalid Pervaiz Akhtar,Fazal Akbar,Ishtiaq Hassan,Imran Amin,Muhammad Saeed,Shahid Mansoor 한국식물병리학회 2016 Plant Pathology Journal Vol.32 No.1

        Cotton leaf curl is devastating disease of cotton characterized by leaf curling, vein darkening and enations. The disease symptoms are induced by DNA satellite known as Cotton leaf curl Multan betasatellite (CLCuMuB), dominant betasatellite in cotton but another betasatellite known as Chili leaf curl betasatellite (ChLCB) is also found associated with the disease. Grafting experiment was performed to determine if host plant resistance is determinant of dominant population of betasatellite in cotton (several distinct strains of CLCuMuB are associated with the disease). Infected scion of Gossypium hirsutum collected from field (the source) was grafted on G. arboreum, a diploid cotton species, resistant to the disease. A healthy scion of G. hirsutum (sink) was grafted at the top of G. arboreum to determine the movement of virus/betasatellite to upper susceptible scion of G. hirsutum. Symptoms of disease appeared in the upper scion and presence of virus/betasatellite in the upper scion was confirmed via molecular techniques, showing that virus/betasatellite was able to move to upper scion through resistant G. arboreum. However, no symptoms appeared on G. arboreum. Betasatelites were cloned and sequenced from lower scion, upper scion and G. arboreum which show that the lower scion contained both CLCuMuB and ChLCB, however only ChLCB was found in G. arboreum. The upper scion contained CLCuMuB with a deletion of 78 nucleotides (nt) in the non-coding region between Arich sequence and βC1 gene and insertion of 27 nt in the middle of βC1 ORF. This study may help in investigating molecular basis of resistance in G. arboreum.

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