http://chineseinput.net/에서 pinyin(병음)방식으로 중국어를 변환할 수 있습니다.
변환된 중국어를 복사하여 사용하시면 됩니다.
AllergenPro: an integrated database for allergenicity analysis and prediction
Kim, Chang-Kug,Seol, Young-Joo,Lee, Dong-Jun,Jeong, In-Seon,Yoon, Ung-Han,Lee, Jong-Yeol,Lee, Gang-Seob,Park, Dong-Suk Biomedical Informatics 2014 Bioinformation Vol.10 No.6
<P>The National Agricultural Biotechnology Information Center (NABIC) reconstructed an AllergenPro database for allergenic proteins analysis and allergenicity prediction. The AllergenPro is an integrated web-based system providing information about allergen in foods, microorganisms, animals and plants. The allergen database has the three main features namely, (1) allergen list with epitopes, (2) searching of allergen using keyword, and (3) methods for allergenicity prediction. This updated AllergenPro outputs the search based allergen information through a user-friendly web interface, and users can run tools for allergenicity prediction using three different methods namely, (1) FAO/WHO, (2) motif-based and (3) epitope-based methods. </P><P><B>Availability</B></P><P>The database is available for free at http://nabic.rda.go.kr/allergen/</P>
Molecular marker database for efficient use in agricultural breeding programs
Kim, Chang-Kug,Lee, Gang-Seob,Mo, Ji-Su,Bae, Seon-Hwa,Lee, Tae-Ho Biomedical Informatics 2015 Bioinformation Vol.11 No.9
<P>The National Agricultural Biotechnology Information Center (NABIC) constructed a web-based molecular marker database to provide information about 7,847 sequence-tagged site (STS) markers identified in the 11 species using a next generation sequencing (NGS) technologies. The database consists of three major functional categories: keyword search, detailed viewer and download function. The molecular marker annotation table provides detailed information such as ownership information, basic information, and STS-related characterization information.</P><P><B>Availability</B></P><P>The database is available for free at http://nabic.rda.go.kr/Molecularmarker</P>
Kim, Dong-Wook,Kim, Ryong Nam,Kim, Dae-Soo,Choi, Sang-Haeng,Chae, Sung-Hwa,Park, Hong-Seog Biomedical Informatics 2012 Bioinformation Vol.8 No.16
<P>Many biologists are familiar with BLAST (Basic Local Alignment Search Tool). A major difficulty with BLAST is searching a massive number of queries without depending on professional help with scripting languages. Hence, we describe the development of an interface for BLAST to perform sequence search for a set of query sequences at one instance. This software interface runs on all Windows-based personal computers (PCs) and can be widely used by biologists who are not familiar with professional informatics command languages and yet want to perform massive sequence analysis. easySEARCH is freely available as a standalone program.</P><P><B>Availability</B></P><P>http://210.219.44.213/easysearch_down.html</P>
NABIC marker database: A molecular markers information network of agricultural crops
Kim, Chang-Kug,Seol, Young-Joo,Lee, Dong-Jun,Jeong, In-Seon,Yoon, Ung-Han,Lee, Gang-Seob,Hahn, Jang-Ho,Park, Dong-Suk Biomedical Informatics 2013 Bioinformation Vol.9 No.17
<P>In 2013, National Agricultural Biotechnology Information Center (NABIC) reconstructs a molecular marker database for useful genetic resources. The web-based marker database consists of three major functional categories: map viewer, RSN marker and gene annotation. It provides 7250 marker locations, 3301 RSN marker property, 3280 molecular marker annotation information in agricultural plants. The individual molecular marker provides information such as marker name, expressed sequence tag number, gene definition and general marker information. This updated marker-based database provides useful information through a user-friendly web interface that assisted in tracing any new structures of the chromosomes and gene positional functions using specific molecular markers.</P><P><B>Availability</B></P><P>The database is available for free at http://nabic.rda.go.kr/gere/rice/molecularMarkers/</P>
NABIC Microarray: an integrated database of high throughput data for gene expression profiles
Lee, Jae-Hee,Kang, Sang-Ho,Lee, Jong-Yeol,Kim, Chang-Kug Biomedical Informatics 2015 Bioinformation Vol.11 No.11
<P>The National Agricultural Biotechnology Information Center (NABIC) in Korea constructed a web-based database to provide information about gene expression profiles identified in the microorganism, plants, and animals. The deposited archive of NABIC microarray database consists of metadata spreadsheet, matrix spreadsheet, and raw data files. It provides three major functions such as microarray search, viewer and download option of raw data. An information table of five fields (i.e., ownership, basic, series, samples, and protocols) shows the specific description of data for selected DNA microarray.</P><P><B>Availability</B></P><P>The database is available online for free at http://nabic.rda.go.kr/DNAchip</P>
An online database for genome information of agricultural plants
Kim, ChangKug,Park, DongSuk,Seol, YoungJoo,Yoon, UngHan,Lee, GangSeob,Hahn, JangHo Biomedical Informatics 2012 Bioinformation Vol.8 No.21
<P>The integration-based genome database provides useful information through a user-friendly web interface that allows analysis of comparative genome for agricultural plants. We have concentrated on the functional bioinformatics of major agricultural resources, such as rice, Chinese cabbage, rice mutant lines, and microorganisms. The major functions are focused on functional genome analysis, including genome projects, gene expression analysis, gene markers with genetic map, analysis tools for comparative genome structure, and genome annotation in agricultural plants.</P><P><B>Availability</B></P><P>The database is available for free at http://nabic.naas.go.kr/</P>
Kim, ChangKug,Park, DongSuk,Seol, YoungJoo,Hahn, JangHo Biomedical Informatics 2011 Bioinformation Vol.6 No.6
<P>The National Agricultural Biotechnology Information Center (NABIC) constructed an agricultural biology-based infrastructure and developed a Web based relational database for agricultural plants with biotechnology information. The NABIC has concentrated on functional genomics of major agricultural plants, building an integrated biotechnology database for agro-biotech information that focuses on genomics of major agricultural resources. This genome database provides annotated genome information from 1,039,823 records mapped to rice, Arabidopsis, and Chinese cabbage.</P>
RiceQTLPro: an integrated database for quantitative trait loci marker mapping in rice plant
Kim, Chang-Kug,Seol, Young-Joo,Lee, Dong-Jun,Lee, Jae-Hee,Lee, Tae-Ho,Park, Dong-Suk Biomedical Informatics 2014 Bioinformation Vol.10 No.10
<P>The National Agricultural Biotechnology Information Center (NABIC) in South Korea reconstructed a RiceQTLPro database for gene positional analysis and structure prediction of the chromosomes. This database is an integrated web-based system providing information about quantitative trait loci (QTL) markers in rice plant. The RiceQTLPro has the three main features namely, (1) QTL markers list, (2) searching of markers using keyword, and (3) searching of marker position on the rice chromosomes. This updated database provides 112 QTL markers information with 817 polymorphic markers on each of the 12 chromosomes in rice.</P><P><B>Availability</B></P><P>The database is available for free at http://nabic.rda.go.kr/gere/rice/geneticMap/</P>
An integrated database to enhance the identification of SNP markers for rice
Kim, ChangKug,Yoon, UngHan,Lee, GangSeob,Park, SungHan,Seol, Young-Joo,Lee, HwanKi,Hahn, JangHo Biomedical Informatics Publishing Group 2009 Bioinformation Vol.4 No.6
<P>The National Academy of Agricultural Science (NAAS) has developed a web-based marker database to provide information about SNP markers in rice. The database consists of three major functional categories: map viewing, marker searching and gene annotation. It provides 12,829 SNP markers information including gene location information on 12 chromosomes in rice. The annotation of SNP marker provides information such as marker name, EST number, gene definition and general marker information. Users are assisted in tracing any new structures of the chromosomes and gene positional functions using specific SNP markers.</P><P><B>Availability</B></P><P>The database is available for free at http://nabic.niab.go.kr/SNP/</P>
A database for allergenic proteins and tools for allergenicity prediction
Kim, ChangKug,Kwon, SooJin,Lee, GangSeob,Lee, HwanKi,Choi, JiWeon,Kim, YongHwan,Hahn, JangHo Biomedical Informatics Publishing Group 2009 Bioinformation Vol.3 No.8
<P>The AllergenPro database has developed a web-based system that will provide information about allergen in microbes, animals and plants. The database has three major parts and functions:(i) database list; (ii) allergen search; and (iii) allergenicity prediction. The database contains 2,434 allergens related information readily available in the database such as on allergens in rice microbes (712 records), animals (617 records) and plants (1,105 records). Furthermore, this database provides bioinformatics tools for allergenicity prediction. Users can search for specific allergens by various methods and can run tools for allergenicity prediction using three different methods.</P><P><B>Availability</B></P><P>The database is available for free at http://www.niab.go.kr/nabic/</P>