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RISS 인기검색어
- 검색키워드
- 저자 : Conant, Gavin C (검색결과 2 건)
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Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics.
Decker, Jared E,Pires, J Chris,Conant, Gavin C,McKay, Stephanie D,Heaton, Michael P,Chen, Kefei,Cooper, Alan,Vilkki, Johanna,Seabury, Christopher M,Caetano, Alexandre R,Johnson, Gary S,Brenneman, Rick National Academy of Sciences 2009 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF Vol.106 No.44
<P>The Pecorans (higher ruminants) are believed to have rapidly speciated in the Mid-Eocene, resulting in five distinct extant families: Antilocapridae, Giraffidae, Moschidae, Cervidae, and Bovidae. Due to the rapid radiation, the Pecoran phylogeny has proven difficult to resolve, and 11 of the 15 possible rooted phylogenies describing ancestral relationships among the Antilocapridae, Giraffidae, Cervidae, and Bovidae have each been argued as representations of the true phylogeny. Here we demonstrate that a genome-wide single nucleotide polymorphism (SNP) genotyping platform designed for one species can be used to genotype ancient DNA from an extinct species and DNA from species diverged up to 29 million years ago and that the produced genotypes can be used to resolve the phylogeny for this rapidly radiated infraorder. We used a high-throughput assay with 54,693 SNP loci developed for Bos taurus taurus to rapidly genotype 678 individuals representing 61 Pecoran species. We produced a highly resolved phylogeny for this diverse group based upon 40,843 genome-wide SNP, which is five times as many informative characters as have previously been analyzed. We also establish a method to amplify and screen genomic information from extinct species, and place Bison priscus within the Bovidae. The quality of genotype calls and the placement of samples within a well-supported phylogeny may provide an important test for validating the fidelity and integrity of ancient samples. Finally, we constructed a phylogenomic network to accurately describe the relationships between 48 cattle breeds and facilitate inferences concerning the history of domestication and breed formation.</P>
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Thermal transport modelling in a fully integrated surface/subsurface framework
Brookfield, A. E.,Sudicky, E. A.,Park, Y.-J.,Conant Jr., B. John Wiley Sons, Ltd. 2009 Hydrological processes Vol.23 No.15
<P>Thermal stream loadings from both natural and anthropogenic sources have significant relevance with respect to ecosystem health and water resources management, particularly in the context of future climate change. In recent years, there has been an increase in field-based research directed towards characterizing thermal energy transport exchange processes that occur at the surface water/groundwater interface of streams. In spite of this effort, relatively little work has been performed to simulate these exchanges and elucidate their roles in mediating surface water temperatures and to simultaneously take into account all the pertinent hydrological, meteorological and surface/variably-saturated subsurface processes. To address this issue, HydroGeoSphere, a fully-integrated surface/subsurface flow and transport model, was enhanced to include fully integrated thermal energy transport. HydroGeoSphere can simulate water flow, evapotranspiration, and advective-dispersive heat and solute transport over the 2D land surface and water flow and heat and solute transport in the 3D subsurface under variably saturated conditions. In this work, the new thermal capabilities of HydroGeoSphere are tested and verified by comparing HydroGeoSphere simulation results to those from a previous subsurface thermal groundwater injection study and also by simulating an example of atmospheric thermal energy exchange. High-resolution 3D numerical simulations of a well-characterized reach of the Pine River in Ontario, Canada are also presented to demonstrate thermal energy transport in an atmosphere–groundwater–surface water system. The HydroGeoSphere simulation successfully matched the spatial variations in the thermal patterns observed in the riverbed, the surface water and the groundwater. The computational framework can be used to provide quantitative guidance towards establishing the conditions needed to maintain a healthy ecosystem. Copyright © 2009 John Wiley & Sons, Ltd.</P>
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