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      A report of 37 unrecorded anaerobic bacterial species isolated from the Geum River in South Korea

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      https://www.riss.kr/link?id=A106880236

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      다국어 초록 (Multilingual Abstract)

      A total of 37 anaerobic bacteria strains within the classes Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Bacteroidia, Flavobacteriia, Bacilli, Clostridia, and Fusobacteriia were isolated from freshwater and sediment of the Geum River ...

      A total of 37 anaerobic bacteria strains within the classes Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Bacteroidia, Flavobacteriia, Bacilli, Clostridia, and Fusobacteriia were isolated from freshwater and sediment of the Geum River in Korea. The unreported species were related with Rhizobium and Oleomonas of the class Alphaproteobacteria; Acidovorax, Pseudogulbenkiania, and Aromatoleum of the class Betaproteobacteria; Tolumonas, Aeromonas, Cronobacter, Lonsdalea, and Phytobacter of the class Gammaproteobacteria; Bacteroides, Dysgonomonas, Macellibacteroides, and Parabacteroides of the class Bacteroidia; Flavobacterium of the class Flavobacteriia; Bacillus and Paenibacillus of the class Bacilli; Clostridium, Clostridioides, Paraclostridium, Romboutsia, Sporacetigenium, and Terrisporobacter of the class Clostridia; and Cetobacterium and Ilyobacter of the class Fusobacteriia. A total of 37 strains, with >98.7% 16S rRNA gene sequence similarity with validly published bacterial species, but not reported in Korea, were determined to be unrecorded anaerobic bacterial species in Korea.

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      참고문헌 (Reference)

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      2 Collins, M., "The phylogeny of the genus Clostridium : proposal of five new genera and eleven new species combinations" 44 (44): 812-826, 1994

      3 Saitou, N., "The neighbor-joining method : a new method for reconstructing phylogenetic trees" 4 (4): 406-425, 1987

      4 Buck, M., "The Nagoya Protocol on access to genetic resources and the fair and equitable sharing of benefits arising from their utilization to the Convention on Biological Diversity" 20 (20): 47-61, 2011

      5 Chen, S., "Sporacetigenium mesophilum gen. nov., sp. nov., isolated from an anaerobic digester treating municipal solid waste and sewage" 56 (56): 721-725, 2006

      6 Wang, Y., "Romboutsia sedimentorum sp. nov., isolated from an alkaline-saline lake sediment and emended description of the genus Romboutsia" 65 (65): 1193-1198, 2015

      7 Sheu, S. -Y., "Rhizobium alvei sp. nov., isolated from a freshwater river" 65 (65): 472-478, 2015

      8 Brady, C. L., "Proposal to reclassify Brenneria quercina(Hildebrand and Schroth 1967)Hauben et al. 1999 into a new genus, Lonsdalea gen. nov., as Lonsdalea quercina comb. nov., descriptions of Lonsdalea quercina subsp. quercina comb. nov., Lonsdalea quercina subsp. iberica subsp. nov. and Lonsdalea quercina subsp. britannica subsp. nov., emendation of the description of the genus Brenneria, reclassification of Dickeya dieffenbachiae as Dickeya dadantii subsp. dieffenbachiae comb. nov., and emendation of the description of Dickeya dadantii" 62 (62): 1592-1602, 2012

      9 Stackebrandt, E., "Phylogenetic basis for a taxonomic dissection of the genus Clostridium" 24 (24): 253-258, 1999

      10 Juseok Kim, "Paracoccus jeotgali sp. nov., isolated from Korean salted and fermented shrimp" 한국미생물학회 57 (57): 444-449, 2019

      1 Fitch, W.M., "Toward defining the course of evolution : minimum change for a specific tree topology" 20 (20): 406-416, 1971

      2 Collins, M., "The phylogeny of the genus Clostridium : proposal of five new genera and eleven new species combinations" 44 (44): 812-826, 1994

      3 Saitou, N., "The neighbor-joining method : a new method for reconstructing phylogenetic trees" 4 (4): 406-425, 1987

      4 Buck, M., "The Nagoya Protocol on access to genetic resources and the fair and equitable sharing of benefits arising from their utilization to the Convention on Biological Diversity" 20 (20): 47-61, 2011

      5 Chen, S., "Sporacetigenium mesophilum gen. nov., sp. nov., isolated from an anaerobic digester treating municipal solid waste and sewage" 56 (56): 721-725, 2006

      6 Wang, Y., "Romboutsia sedimentorum sp. nov., isolated from an alkaline-saline lake sediment and emended description of the genus Romboutsia" 65 (65): 1193-1198, 2015

      7 Sheu, S. -Y., "Rhizobium alvei sp. nov., isolated from a freshwater river" 65 (65): 472-478, 2015

      8 Brady, C. L., "Proposal to reclassify Brenneria quercina(Hildebrand and Schroth 1967)Hauben et al. 1999 into a new genus, Lonsdalea gen. nov., as Lonsdalea quercina comb. nov., descriptions of Lonsdalea quercina subsp. quercina comb. nov., Lonsdalea quercina subsp. iberica subsp. nov. and Lonsdalea quercina subsp. britannica subsp. nov., emendation of the description of the genus Brenneria, reclassification of Dickeya dieffenbachiae as Dickeya dadantii subsp. dieffenbachiae comb. nov., and emendation of the description of Dickeya dadantii" 62 (62): 1592-1602, 2012

      9 Stackebrandt, E., "Phylogenetic basis for a taxonomic dissection of the genus Clostridium" 24 (24): 253-258, 1999

      10 Juseok Kim, "Paracoccus jeotgali sp. nov., isolated from Korean salted and fermented shrimp" 한국미생물학회 57 (57): 444-449, 2019

      11 Tan, H. -Q., "Parabacteroides chartae sp. nov., an obligately anaerobic species from wastewater of a paper mill" 62 (62): 2613-2617, 2012

      12 Grim, C. J., "Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation" 14 (14): 366-, 2013

      13 Hong, Y. -Y., "Paenibacillus sonchi sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Sonchus oleraceus" 59 (59): 2656-2661, 2009

      14 Mishra, A. K., "Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov" 6 (6): 386-, 2012

      15 National species list of Korea, "National Institute of Biological Resources"

      16 Jabari, L., "Macellibacteroides fermentans gen. nov., sp. nov., a member of the family Porphyromonadaceae isolated from an upflow anaerobic filter treating abattoir wastewaters" 62 (62): 2522-2527, 2012

      17 Kumar, S., "MEGA7 : molecular evolutionary genetics analysis version 7. 0 for bigger datasets" 33 (33): 1870-1874, 2016

      18 Yoon, S. -H., "Introducing EzBioCloud : a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies" 67 (67): 1613-, 2017

      19 Krieger, C. J., "Initial reactions in anaerobic oxidation of m-xylene by the denitrifying bacterium Azoarcus sp. strain T" 181 (181): 6403-6410, 1999

      20 Du, J., "Flavobacterium tyrosinilyticum sp. nov., isolated from the rhizosphere of wild strawberry" 66 (66): 2629-2634, 2016

      21 Felsenstein, J., "Evolutionary trees from DNA sequences : a maximum likelihood approach" 17 (17): 368-376, 1981

      22 Kodama, Y., "Dysgonomonas oryzarvi sp. nov., isolated from a microbial fuel cell" 62 (62): 3055-3059, 2012

      23 Tushar, L., "Draft genome sequence of antimicrobial-producing Clostridium sp. JC272, isolated from marine sediment" 3 (3): e00650-e00615, 2015

      24 Zhang, G. X., "Diverse endophytic nitrogen-fixing bacteria isolated from wild rice Oryza rufipogon and description of Phytobacter diazotrophicus gen. nov. sp. nov" 189 (189): 431-439, 2008

      25 Chertkov, O., "Complete genome sequence of Tolumonas auensis type strain(TA 4T)" 5 (5): 112-, 2011

      26 Cirne, D. G., "Clostridium lundense sp. nov., a novel anaerobic lipolytic bacterium isolated from bovine rumen" 56 (56): 625-628, 2006

      27 Ruan, Z., "Clostridium huakuii sp. nov., an anaerobic, acetogenic bacterium isolated from methanogenic consortia" 64 (64): 4027-4032, 2014

      28 Broda, D., "Clostridium gasigenes sp. nov., a psychrophile causing spoilage of vacuum-packed meat" 50 (50): 107-118, 2000

      29 Inglett, K., "Clostridium chromiireducens sp. nov., isolated from Cr(VI)-contaminated soil" 61 (61): 2626-2631, 2011

      30 O’Neal, L., "Clostridium amazonense sp. nov. an obliqately anaerobic bacterium isolated from a remote Amazonian community in Peru" 35 : 33-37, 2015

      31 Finegold, S. M., "Cetobacterium somerae sp. nov. from human feces and emended description of the genus Cetobacterium" 26 (26): 177-181, 2003

      32 Thompson, J. D., "CLUSTAL W : improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice" 22 (22): 4673-4680, 1994

      33 Zhang, Y. Z., "Bacillus endoradicis sp. nov., an endophytic bacterium isolated from soybean root" 62 (62): 359-363, 2012

      34 Marti, E., "Aeromonas rivipollensis sp. nov., a novel species isolated from aquatic samples" 55 (55): 1435-1439, 2015

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      연월일 이력구분 이력상세 등재구분
      2028 평가예정 재인증평가 신청대상 (재인증)
      2022-01-01 평가 등재학술지 유지 (재인증) KCI등재
      2019-01-01 평가 등재학술지 선정 (계속평가) KCI등재
      2018-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2017-01-01 평가 등재후보학술지 유지 (계속평가) KCI등재후보
      2015-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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