RISS 학술연구정보서비스

검색
다국어 입력

http://chineseinput.net/에서 pinyin(병음)방식으로 중국어를 변환할 수 있습니다.

변환된 중국어를 복사하여 사용하시면 됩니다.

예시)
  • 中文 을 입력하시려면 zhongwen을 입력하시고 space를누르시면됩니다.
  • 北京 을 입력하시려면 beijing을 입력하시고 space를 누르시면 됩니다.
닫기
    인기검색어 순위 펼치기

    RISS 인기검색어

      KCI등재 SCOPUS SCIE

      The mitochondrial genome of the Kentish Plover Charadrius alexandrinus (Charadriiformes: Charadriidae) and phylogenetic analysis of Charadrii

      한글로보기

      https://www.riss.kr/link?id=A105909128

      • 0

        상세조회
      • 0

        다운로드
      서지정보 열기
      • 내보내기
      • 내책장담기
      • 공유하기
      • 오류접수

      부가정보

      다국어 초록 (Multilingual Abstract)

      The suborder Charadrii (Aves: Charadriiformes), one of the most species-rich radiations within shorebirds, which contains good source for studies of ecology, behaviour and evolution. The resources of mitogenome have rapidly accumulated in recent years due to the advanced genomic sequencing, while suborder Charadrii’s mitogenome has not been well studied. The primary objective of this study was to determine the complete mitogenome sequence of Charadrius alexandrinus, and investigated the evolutionary relationship within Charadrii. The mitogenome of C. alexandrinus were generated by amplification of overlapping Polymerase Chain Reaction (PCR) fragments. In this study, we determined the complete mitogenome sequence of the Kentish Plover Charadrius alexandrinus, and comparative analysed 11 species to illustrate mitogenomes structure and investigated their evolutionary relationship within Charadrii. The Charadrii mitogenomes displayed moderate size variation, the mean size was 16,944 bp (SD = 182, n = 11), and most of the size variation due to mutations in the control region (CR).
      Nucleotide composition was consistently biased towards AT rich, and the A+T content also varies for each protein-coding genes. The variation in ATP8 and COIII was the highest and lowest respectively. The GC skew was always negative, with the ATP8 had higher value than other regions. The average uncorrected pairwise distances revealed heterogeneity of evolutionary rate for each gene, the COIII, COI and COII have slow evolutionary rate, whereas the gene of ATP8 has the relative fast rate. The highest value of Ks and Ka were ND1 and ATP8, and the ratios of Ka/Ks are lower than 0.27, indicating that they were under purifying selection. Phylogenomic analysis based on the complete mitochondrial genomes strongly supported the monophyly of the suborder Charadrii. This study improves our understanding of mitogenome structure and evolution, and providing further insights into phylogeny and taxonomy in Charadrii. In future, sequencing more mitogenomes from various taxonomic levels will significantly improve our understanding of phylogenetic relationships within Charadrii.
      번역하기

      The suborder Charadrii (Aves: Charadriiformes), one of the most species-rich radiations within shorebirds, which contains good source for studies of ecology, behaviour and evolution. The resources of mitogenome have rapidly accumulated in recent years...

      The suborder Charadrii (Aves: Charadriiformes), one of the most species-rich radiations within shorebirds, which contains good source for studies of ecology, behaviour and evolution. The resources of mitogenome have rapidly accumulated in recent years due to the advanced genomic sequencing, while suborder Charadrii’s mitogenome has not been well studied. The primary objective of this study was to determine the complete mitogenome sequence of Charadrius alexandrinus, and investigated the evolutionary relationship within Charadrii. The mitogenome of C. alexandrinus were generated by amplification of overlapping Polymerase Chain Reaction (PCR) fragments. In this study, we determined the complete mitogenome sequence of the Kentish Plover Charadrius alexandrinus, and comparative analysed 11 species to illustrate mitogenomes structure and investigated their evolutionary relationship within Charadrii. The Charadrii mitogenomes displayed moderate size variation, the mean size was 16,944 bp (SD = 182, n = 11), and most of the size variation due to mutations in the control region (CR).
      Nucleotide composition was consistently biased towards AT rich, and the A+T content also varies for each protein-coding genes. The variation in ATP8 and COIII was the highest and lowest respectively. The GC skew was always negative, with the ATP8 had higher value than other regions. The average uncorrected pairwise distances revealed heterogeneity of evolutionary rate for each gene, the COIII, COI and COII have slow evolutionary rate, whereas the gene of ATP8 has the relative fast rate. The highest value of Ks and Ka were ND1 and ATP8, and the ratios of Ka/Ks are lower than 0.27, indicating that they were under purifying selection. Phylogenomic analysis based on the complete mitochondrial genomes strongly supported the monophyly of the suborder Charadrii. This study improves our understanding of mitogenome structure and evolution, and providing further insights into phylogeny and taxonomy in Charadrii. In future, sequencing more mitogenomes from various taxonomic levels will significantly improve our understanding of phylogenetic relationships within Charadrii.

      더보기

      참고문헌 (Reference)

      1 Lowe TM, "tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence" 25 : 955-964, 1997

      2 Mayr G, "The phylogeny of Charadriiform birds (shorebirds and allies): reassessing the conflict between morphology and molecules" 161 : 916-934, 2011

      3 Yoon KB, "The mitochondrial genome of the Saunders's gull Chroicocephalus saundersi (Charadriiformes: Laridae) and a higher phylogeny of shorebirds (Charadriiformes)" 572 : 227-236, 2015

      4 Hu C, "The mitochondrial genome of pin-tailed snipe Gallinago stenura, and its implications for the phylogeny of Charadriiformes" 12 : e0175244-, 2017

      5 Ren Q, "The complete mitochondrial genome of the yellowbrowed bunting, Emberiza chrysophrys (Passeriformes: Emberizidae), and phylogenetic relationships within the genus Emberiza" 93 : 699-707, 2014

      6 Smith NA, "Systematics and evolution of the Pan-Alcidae (Aves, Charadriiformes)" 46 : 125-140, 2015

      7 Friesen VL, "Speciation in seabirds: why are there so many species... and why aren't there more?" 156 : 1-13, 2015

      8 Paton TA, "Sequences from 14 mitochondrial genes provide a well-supported phylogeny of the Charadriiform birds congruent with the nuclear RAG-1 tree" 39 : 657-667, 2006

      9 Paton TA, "RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds" 29 : 268-278, 2003

      10 Hassanin A, "Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution" 38 : 100-116, 2006

      1 Lowe TM, "tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence" 25 : 955-964, 1997

      2 Mayr G, "The phylogeny of Charadriiform birds (shorebirds and allies): reassessing the conflict between morphology and molecules" 161 : 916-934, 2011

      3 Yoon KB, "The mitochondrial genome of the Saunders's gull Chroicocephalus saundersi (Charadriiformes: Laridae) and a higher phylogeny of shorebirds (Charadriiformes)" 572 : 227-236, 2015

      4 Hu C, "The mitochondrial genome of pin-tailed snipe Gallinago stenura, and its implications for the phylogeny of Charadriiformes" 12 : e0175244-, 2017

      5 Ren Q, "The complete mitochondrial genome of the yellowbrowed bunting, Emberiza chrysophrys (Passeriformes: Emberizidae), and phylogenetic relationships within the genus Emberiza" 93 : 699-707, 2014

      6 Smith NA, "Systematics and evolution of the Pan-Alcidae (Aves, Charadriiformes)" 46 : 125-140, 2015

      7 Friesen VL, "Speciation in seabirds: why are there so many species... and why aren't there more?" 156 : 1-13, 2015

      8 Paton TA, "Sequences from 14 mitochondrial genes provide a well-supported phylogeny of the Charadriiform birds congruent with the nuclear RAG-1 tree" 39 : 657-667, 2006

      9 Paton TA, "RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds" 29 : 268-278, 2003

      10 Hassanin A, "Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution" 38 : 100-116, 2006

      11 Baker AJ, "Phylogenetic relationships and divergence times of Charadriiformes genera: multigene evidence for the Cretaceous origin of at least 14 clades of shorebirds" 3 : 205-209, 2007

      12 Perna NT, "Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes" 41 : 353-358, 1995

      13 Lanfear R, "Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses" 29 : 1695-1701, 2012

      14 Lohse M, "OrganellarGenome-DRAW: a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets" 41 : 575-581, 2013

      15 Fain MG, "Multilocus perspectives on the monophyly and phylogeny of the order Charadriiformes (Aves)" 7 : 324-, 2007

      16 Almalki M, "Morphological and genetic differentiation among kentish plover Charadrius alexandrinus populations in Macaronesia" 64 : 3-16, 2017

      17 Sambrook J, "Molecular cloning:a laboratory manual" Cold Spring Harbor Laboratory Press 1989

      18 Tamura K, "MEGA6: molecular evolutionary genetics analysis version 6.0" 30 : 2725-2729, 2013

      19 Que P, "Low nest survival of a breeding shorebird in Bohai Bay, China" 156 : 297-307, 2015

      20 Ericson PG, "Inter-familial relationships of the shorebirds (Aves: Charadriiformes) based on nuclear DNA sequence data" 3 : 149-154, 2003

      21 Kupper C, "High gene flow on a continental scale in the polyandrous Kentish plover Charadrius alexandrinus" 21 : 5864-5879, 2012

      22 Pacheco MA, "Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders" 28 : 1927-1942, 2011

      23 Hassanin A, "Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences" 54 : 277-298, 2005

      24 Baker AJ, "Eight independent nuclear genes support monophyly of the plovers: the role of mutational variance in gene trees" 65 : 631-641, 2012

      25 Librado P, "DnaSP v5: a software for comprehensive analysis of DNA polymorphism data" 25 : 1451-1452, 2009

      26 Lavrov DV, "Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: duplication and nonrandom loss" 19 : 163-169, 2002

      27 Marshall HD, "Complete mitochondrial genomes from four subspecies of common chaffinch (Fringilla coelebs): new inferences about mitochondrial rate heterogeneity, neutral theory, and phylogenetic relationships within the order Passeriformes" 517 : 37-45, 2013

      28 Li X, "Comparative mitochondrial genomics and phylogenetic relationships of the Crossoptilon species (Phasianidae, Galliformes)" 16 : 1-12, 2014

      29 Yang Z, "Codon-substitution models for heterogeneous selection pressure at amino acid sites" 155 : 431-449, 2000

      30 Hall TA, "BioEdit: a user-friendly biological sequence alignment program for Windows 95/98/NT. Nucleic acids symposium series no 41" 95-98, 1999

      31 Lobry JR, "Asymmetric substitution patterns in the two DNA strands of bacteria" 13 : 660-665, 1996

      32 Mindell DP, "An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles" 15 : 1568-1571, 1998

      33 Laslett D, "ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences" 24 : 172-175, 2008

      더보기

      분석정보

      View

      상세정보조회

      0

      Usage

      원문다운로드

      0

      대출신청

      0

      복사신청

      0

      EDDS신청

      0

      동일 주제 내 활용도 TOP

      더보기

      주제

      연도별 연구동향

      연도별 활용동향

      연관논문

      연구자 네트워크맵

      공동연구자 (7)

      유사연구자 (20) 활용도상위20명

      인용정보 인용지수 설명보기

      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2015-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2012-05-07 학술지명변경 한글명 : 한국유전학회지 -> Genes & Genomics KCI등재
      2011-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2009-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2008-04-14 학술지명변경 외국어명 : Korean Journal of Genetics -> Genes and Genomics KCI등재
      2007-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2003-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
      2002-01-01 평가 등재후보학술지 유지 (등재후보1차) KCI등재후보
      1999-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
      더보기

      학술지 인용정보

      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.51 0.12 0.38
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.32 0.27 0.258 0.02
      더보기

      이 자료와 함께 이용한 RISS 자료

      나만을 위한 추천자료

      해외이동버튼