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      SCIE SCOPUS KCI등재

      Genome of Betaproteobacterium Caenimonas sp. Strain SL110 Contains a Coenzyme F420 Biosynthesis Gene Cluster = Genome of Betaproteobacterium Caenimonas sp. Strain SL110 Contains a Coenzyme F420 Biosynthesis Gene Cluster

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      https://www.riss.kr/link?id=A100177619

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      다국어 초록 (Multilingual Abstract)

      To probe the genomic properties of microbes thriving in desert lakes, we sequenced the full genome of a betaproteobacterial strain (SL110) belonging to the understudied genus Caenimonas of the family Comamonadaceae. This strain was isolated from a freshwater lake in the western Gobi Desert, Northern China. Its genome contains genes encoding carbon monoxide dehydrogenase, nitrate reductase, nitrite reductase, nitric oxide reductase, and sulfur oxidation enzymes, highlighting the potentially important contribution of this group of bacteria to the cycling of inorganic elements in nature. Unexpectedly, a coenzyme F420 biosynthesis gene cluster was identified. A further search for F420 biosynthesis gene homologs in genomic databases suggests the possible widespread presence of F420 biosynthesis gene clusters in proteobacterial genomes.
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      To probe the genomic properties of microbes thriving in desert lakes, we sequenced the full genome of a betaproteobacterial strain (SL110) belonging to the understudied genus Caenimonas of the family Comamonadaceae. This strain was isolated from a fre...

      To probe the genomic properties of microbes thriving in desert lakes, we sequenced the full genome of a betaproteobacterial strain (SL110) belonging to the understudied genus Caenimonas of the family Comamonadaceae. This strain was isolated from a freshwater lake in the western Gobi Desert, Northern China. Its genome contains genes encoding carbon monoxide dehydrogenase, nitrate reductase, nitrite reductase, nitric oxide reductase, and sulfur oxidation enzymes, highlighting the potentially important contribution of this group of bacteria to the cycling of inorganic elements in nature. Unexpectedly, a coenzyme F420 biosynthesis gene cluster was identified. A further search for F420 biosynthesis gene homologs in genomic databases suggests the possible widespread presence of F420 biosynthesis gene clusters in proteobacterial genomes.

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      참고문헌 (Reference)

      1 Zerbino DR, "Velvet: algorithms for de novo short read assembly using de Bruijn graphs" 18 : 821-829, 2008

      2 Choi KP, "Use of transposon Tn5367 mutagenesis and a nitroimidazopyranbased selection system to demonstrate a requirement for fbiA and fbiB in coenzyme F-420 biosynthesis by Mycobacterium bovis BCG" 183 : 7058-7066, 2001

      3 Selengut JD, "Unexpected abundance of coenzyme F-420-dependent enzymes in Mycobacterium tuberculosis and other Actinobacteria" 192 : 5788-5798, 2010

      4 Price MN, "The life-cycle of operons" 2 : 859-873, 2006

      5 Aziz RK, "The RAST server : Rapid annotations using subsystems technology" 9 : 75-, 2008

      6 Garrity GM, "Taxonomic Outline of the Bacteria and Archaea. Release 7.7" 2007

      7 Lawrence J., "Selfish operons: the evolutionary impact of gene clustering in prokaryotes and eukaryotes" 9 : 642-648, 1999

      8 Ermolaeva MD, "Prediction of operons in microbial genomes" 29 : 1216-1221, 2001

      9 Fondi M, "Origin and evolution of operons and metabolic pathways" 160 : 502-512, 2009

      10 Forouhar F, "Molecular insights into the biosynthesis of the F-420 coenzyme" 283 : 11832-11840, 2008

      1 Zerbino DR, "Velvet: algorithms for de novo short read assembly using de Bruijn graphs" 18 : 821-829, 2008

      2 Choi KP, "Use of transposon Tn5367 mutagenesis and a nitroimidazopyranbased selection system to demonstrate a requirement for fbiA and fbiB in coenzyme F-420 biosynthesis by Mycobacterium bovis BCG" 183 : 7058-7066, 2001

      3 Selengut JD, "Unexpected abundance of coenzyme F-420-dependent enzymes in Mycobacterium tuberculosis and other Actinobacteria" 192 : 5788-5798, 2010

      4 Price MN, "The life-cycle of operons" 2 : 859-873, 2006

      5 Aziz RK, "The RAST server : Rapid annotations using subsystems technology" 9 : 75-, 2008

      6 Garrity GM, "Taxonomic Outline of the Bacteria and Archaea. Release 7.7" 2007

      7 Lawrence J., "Selfish operons: the evolutionary impact of gene clustering in prokaryotes and eukaryotes" 9 : 642-648, 1999

      8 Ermolaeva MD, "Prediction of operons in microbial genomes" 29 : 1216-1221, 2001

      9 Fondi M, "Origin and evolution of operons and metabolic pathways" 160 : 502-512, 2009

      10 Forouhar F, "Molecular insights into the biosynthesis of the F-420 coenzyme" 283 : 11832-11840, 2008

      11 Singh BK, "Microbial degradation of organophosphorus compounds" 30 : 428-471, 2006

      12 Graupner M, "Methanococcus jannaschii coenzyme F-420 analogs contain a terminal alpha-linked glutamate" 185 : 4662-4665, 2003

      13 Graham DE, "Identification of the 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase required for coenzyme F-420 biosynthesis" 180 : 455-464, 2003

      14 Grochowski LL, "Identification and characterization of the 2-phospho-L-lactate guanylyltransferase involved in coenzyme F420 biosynthesis" 47 : 3033-3037, 2008

      15 Goecks J, "Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences" 11 : 86-, 2010

      16 Berk H, "Function of coenzyme F-420-dependent NADP reductase in methanogenic archaea containing an NADP-dependent alcohol dehydrogenase" 168 : 396-402, 1997

      17 Ebert S, "Function of coenzyme F-420 in aerobic catabolism of 2,4,6-trinitrophenol and 2,4-dinitrophenol by Nocardioides simplex FJ2-1A" 181 : 2669-2674, 1999

      18 Choi KP, "Demonstration that fbiC is required by Mycobacterium bovis BCG for coenzyme F-420 and FO biosynthesis" 184 : 2420-2428, 2002

      19 Graupner M, "Characterization of the 2-phospho-L-lactate transferase enzyme involved in coenzyme F-420 biosynthesis in Methanococcus jannaschii" 41 : 3754-3761, 2002

      20 김수진, "Caenimonas terrae sp. nov., Isolated from a Soil Sample in Korea, and Emended Description of the Genus Caenimonas Ryu et al. 2008" 한국미생물학회 50 (50): 864-868, 2012

      21 Ryu SH, "Caenimonas koreensis gen. nov., sp nov., isolated from activated sludge" 58 : 1064-1068, 2008

      22 Graupner M, "Biosynthesis of the phosphodiester bond in coenzyme F-420 in the methanoarchaea" 40 : 10859-10872, 2001

      23 Bashiri G, "Biology of cofactor F420 in mycobacteria" 279 : 434-434, 2012

      24 Willems A, "Bergey's Manual of Systematic Bacteriology" Springer 686-759, 2005

      25 Price MN, "A novel method for accurate operon predictions in all sequenced prokaryotes" 33 : 880-892, 2005

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2010-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2008-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2006-04-04 학술지명변경 한글명 : -> Journal of Microbiology and Biotechnology KCI등재
      2006-03-30 학술지등록 한글명 :
      외국어명 : Journal of Microbiology and Biotechnology
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      2006-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2001-07-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      1999-01-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 1.59 0.33 1.17
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.91 0.78 0.472 0.08
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