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      KCI등재 SCOPUS SCIE

      Analysis of transient membrane protein interactions by single-molecule diffusional mobility shift assay

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      https://www.riss.kr/link?id=A107281180

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      다국어 초록 (Multilingual Abstract)

      Various repertoires of membrane protein interactions determine cellular responses to diverse environments around cells dynamically in space and time. Current assays, however, have limitations in unraveling these interactions in the physiological state...

      Various repertoires of membrane protein interactions determine cellular responses to diverse environments around cells dynamically in space and time. Current assays, however, have limitations in unraveling these interactions in the physiological states in a living cell due to the lack of capability to probe the transient nature of these interactions on the crowded membrane. Here, we present a simple and robust assay that enables the investigation of transient protein interactions in living cells by using the single-molecule diffusional mobility shift assay (smDIMSA). Utilizing smDIMSA, we uncovered the interaction profile of EGFR with various membrane proteins and demonstrated the promiscuity of these interactions depending on the cancer cell line. The transient interaction profile obtained by smDIMSA will provide critical information to comprehend the crosstalk among various receptors on the plasma membrane.

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      참고문헌 (Reference)

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      2 Strauss, S., "Up to 100-fold speed-up and multiplexing in optimized DNA-PAINT" 17 : 789-791, 2020

      3 Wisniewski, J. R., "Universal sample preparation method for proteome analysis" 6 : 359-362, 2009

      4 Jennings, M. L., "Topography of membrane proteins" 58 : 999-1027, 1989

      5 Lazar-Molnar, E., "The interchain disulfide linkage is not a prerequisite but enhances CD28 costimulatory function" 244 : 125-129, 2006

      6 Paul, M. D., "The RTK interactome: overview and perspective on RTK heterointeractions" 119 : 5881-5921, 2019

      7 Ma, J., "Targeting of erbB3 receptor to overcome resistance in cancer treatment" 13 : 105-, 2014

      8 Yu, X., "Targeting EGFR/HER2/HER3 with a three-in-one aptamer-siRNA chimera confers superior activity against HER2(+)breast cancer" 10 : 317-330, 2018

      9 Rust, M. J., "Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)" 3 : 793-795, 2006

      10 Lippincott-Schwartz, J., "Studying protein dynamics in living cells" 2 : 444-456, 2001

      1 Leschziner, A. E., "Visualizing flexibility at molecular resolution:analysis of heterogeneity in single-particle electron microscopy reconstructions" 36 : 43-62, 2007

      2 Strauss, S., "Up to 100-fold speed-up and multiplexing in optimized DNA-PAINT" 17 : 789-791, 2020

      3 Wisniewski, J. R., "Universal sample preparation method for proteome analysis" 6 : 359-362, 2009

      4 Jennings, M. L., "Topography of membrane proteins" 58 : 999-1027, 1989

      5 Lazar-Molnar, E., "The interchain disulfide linkage is not a prerequisite but enhances CD28 costimulatory function" 244 : 125-129, 2006

      6 Paul, M. D., "The RTK interactome: overview and perspective on RTK heterointeractions" 119 : 5881-5921, 2019

      7 Ma, J., "Targeting of erbB3 receptor to overcome resistance in cancer treatment" 13 : 105-, 2014

      8 Yu, X., "Targeting EGFR/HER2/HER3 with a three-in-one aptamer-siRNA chimera confers superior activity against HER2(+)breast cancer" 10 : 317-330, 2018

      9 Rust, M. J., "Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)" 3 : 793-795, 2006

      10 Lippincott-Schwartz, J., "Studying protein dynamics in living cells" 2 : 444-456, 2001

      11 Kim, D. H., "Single particle tracking-based reaction progress kinetic analysis reveals a series of molecular mechanisms of cetuximab-induced EGFR processes in a single living cell" 8 : 4823-4832, 2017

      12 Jaqaman, K., "Robust single-particle tracking in live-cell time-lapse sequences" 5 : 695-702, 2008

      13 Black, P. C., "Receptor heterodimerization : a new mechanism for plateletderived growth factor induced resistance to anti-epidermal growth factor receptor therapy for bladder cancer" 185 : 693-700, 2011

      14 DeFazio-Eli, L., "Quantitative assays for the measurement of HER1-HER2heterodimerization and phosphorylation in cell lines and breast tumors : applications for diagnostics and targeted drug mechanism of action" 13 : R44-, 2011

      15 Paul, M. D., "Quantifying the strength of heterointeractions among receptor tyrosine kinases from different subfamilies:implications for cell signaling" 295 : 9917-9933, 2020

      16 Sengupta, P., "Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis" 8 : 969-975, 2011

      17 Kanchanawong, P., "Nanoscale architecture of integrin-based cell adhesions" 468 : 580-584, 2010

      18 Jungmann, R., "Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and exchange-PAINT" 11 : 313-318, 2014

      19 Ortiz-Zapater, E., "MET-EGFR dimerization in lung adenocarcinoma is dependent on EGFR mtations and altered by MET kinase inhibition" 12 : e0170798-, 2017

      20 Nijkamp, M. M., "Interaction of EGFR with the tumour microenvironment : implications for radiation treatment" 108 : 17-23, 2013

      21 Babu, M., "Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae" 489 : 585-589, 2012

      22 Solomatin, S. V., "Implications of molecular heterogeneity for the cooperativity of biological macromolecules" 18 : 732-734, 2011

      23 Betzig, E., "Imaging intracellular fluorescent proteins at nanometer resolution" 313 : 1642-1645, 2006

      24 Kuninty, P. R., "ITGA5 inhibition in pancreatic stellate cells attenuates desmoplasia and potentiates efficacy of chemotherapy in pancreatic cancer" 5 : eaax2770-, 2019

      25 Wang, S. J., "Hyaluronan and the interaction between CD44 and epidermal growth factor receptor in oncogenic signaling and chemotherapy resistance in head and neck cancer" 132 : 771-778, 2006

      26 Wang, Q., "Gene expression profiling for diagnosis of triple-negative breast cancer : a multicenter, retrospective cohort study" 9 : 354-, 2019

      27 Bjorkelund, H., "Gefitinib induces epidermal growth factor receptor dimers which alters the interaction characteristics with(1)(2)(5)I-EGF" 6 : e24739-, 2011

      28 Sprague, B. L., "FRAP analysis of binding : proper and fitting" 15 : 84-91, 2005

      29 Phillips, R., "Emerging roles for lipids in shaping membrane-protein function" 459 : 379-385, 2009

      30 Kuwada, S. K., "Effects of trastuzumab on epidermal growth factor receptor-dependent and-independent human colon cancer cells" 109 : 291-301, 2004

      31 De Robertis, M., "Dysregulation of EGFR pathway in EphA2 cell subpopulation significantly associates with poor prognosis in colorectal cancer" 23 : 159-170, 2017

      32 Bhatia, S., "Different cell surface oligomeric states of B7-1 and B7-2 : implications for signaling" 102 : 15569-15574, 2005

      33 Villalobos, V., "Current state of imaging proteinprotein interactions in vivo with genetically encoded reporters" 9 : 321-349, 2007

      34 Jo, M., "Cross-talk between epidermal growth factor receptor and c-Met signal pathways in transformed cells" 275 : 8806-8811, 2000

      35 Hsu, Y. F., "Complement activation mediates cetuximab inhibition of nonsmall cell lung cancer tumor growth in vivo" 9 : 139-, 2010

      36 Reinmuth, N., "Combined anti-PDGFRalpha and PDGFRbeta targeting in non-small cell lung cancer" 124 : 1535-1544, 2009

      37 Sun, R., "Cloning and expression of a novel target fusion protein and its application in anti-tumor therapy" 35 : 1877-1891, 2015

      38 Yang, X., "Cetuximab-mediated tumor regression depends on innate and adaptive immune responses" 21 : 91-100, 2013

      39 Song, N., "Cetuximab-induced MET activation acts as a novel resistance mechanism in colon cancer cells" 15 : 5838-5851, 2014

      40 Uberall, I., "Cetuximab enhances the anti-proliferative effect of trastuzumab in ERBB2 over-expressing breast cancer cells-preliminary study" 24 : 356-360, 2011

      41 Perez, A., "CD44 interacts with EGFR and promotes head and neck squamous cell carcinoma initiation and progression" 49 : 306-313, 2013

      42 Grass, G. D., "CD147, CD44, and the epidermal growth factor receptor(EGFR)signaling pathway cooperate to regulate breast epithelial cell invasiveness" 288 : 26089-26104, 2013

      43 Miernyk, J. A., "Biochemical approaches for discovering proteinprotein interactions" 53 : 597-609, 2008

      44 Kerppola, T. K., "Bimolecular fluorescence complementation(BiFC)analysis as a probe of protein interactions in living cells" 37 : 465-487, 2008

      45 Gottschalk, N., "Anti-epidermal growth factor receptor(EGFR)antibodies overcome resistance of ovarian cancer cells to targeted therapy and natural cytotoxicity" 13 : 12000-12016, 2012

      46 Dorsch, S., "Analysis of receptor oligomerization by FRAP microscopy" 6 : 225-230, 2009

      47 Kim, D. H., "Analysis of Interactions between the epidermal growth factor receptor and soluble ligands on the basis of single-molecule diffusivity in the membrane of living cells" 54 : 7028-7032, 2015

      48 Larsen, A. B., "Activation of the EGFR gene target EphA2 inhibits epidermal growth factor-induced cancer cell motility" 5 : 283-293, 2007

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      학술지 이력

      학술지 이력
      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
      2020-01-01 평가 등재학술지 유지 (해외등재 학술지 평가) KCI등재
      2009-09-21 학회명변경 한글명 : 대한생화학ㆍ분자생물학회 -> 생화학분자생물학회
      영문명 : Korean Society Of Medical Biochemistry And Molecular Biology -> Korean Society Of Biochemistry And Molecular Biology
      KCI등재
      2008-01-01 평가 SCI 등재 (등재유지) KCI등재
      2006-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2004-01-01 평가 등재학술지 유지 (등재유지) KCI등재
      2001-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      1998-07-01 평가 등재후보학술지 선정 (신규평가) KCI등재후보
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      학술지 인용정보

      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 3.74 0.23 2.56
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      1.82 1.45 0.555 0.01
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