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      KCI등재 SCOPUS SCIE

      Analysis of DNA methylation in tissues and development stages of pearl oyster Pinctada fucata

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      https://www.riss.kr/link?id=A104429603

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      다국어 초록 (Multilingual Abstract)

      In this study, we developed a methylationsensitiveamplification polymorphism technique to investigateDNA methylation profiles in different tissues and inthe early-development stages of the pearl oyster Pinctadafucata (P. fucata). Methylation levels in adductor muscle,digestive gland, axe foot, heart, and gill ranged from 11.71to 14.71 %, and significant differences (P\0.05) betweenmethylation levels in different tissues were observed. TheDNA methylation levels of sperm, egg cells, two-cellembryos, morula embryos, trochophore larvae andD-shaped larvae were 13.51, 11.80, 12.14, 12.60, 14.65 and13.18 %, respectively. Development stages of two-cellembryos, morula embryos, trochophore larvae andD-shaped larvae indicated a higher number of identicalDNA methylation status loci in the egg, compared to that inthe sperm. It is probable that DNA methylation patterns ofthe progeny are mainly influenced by the egg, while thesperm may become increasingly important during theprocess of early embryo development. The observeddifferences in methylation levels in the tissues and thedevelopment stages of P. fucata suggest that DNA methylationmay act as an epigenetic regulator during tissuedifferentiation, individual growth, and development.
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      In this study, we developed a methylationsensitiveamplification polymorphism technique to investigateDNA methylation profiles in different tissues and inthe early-development stages of the pearl oyster Pinctadafucata (P. fucata). Methylation levels in...

      In this study, we developed a methylationsensitiveamplification polymorphism technique to investigateDNA methylation profiles in different tissues and inthe early-development stages of the pearl oyster Pinctadafucata (P. fucata). Methylation levels in adductor muscle,digestive gland, axe foot, heart, and gill ranged from 11.71to 14.71 %, and significant differences (P\0.05) betweenmethylation levels in different tissues were observed. TheDNA methylation levels of sperm, egg cells, two-cellembryos, morula embryos, trochophore larvae andD-shaped larvae were 13.51, 11.80, 12.14, 12.60, 14.65 and13.18 %, respectively. Development stages of two-cellembryos, morula embryos, trochophore larvae andD-shaped larvae indicated a higher number of identicalDNA methylation status loci in the egg, compared to that inthe sperm. It is probable that DNA methylation patterns ofthe progeny are mainly influenced by the egg, while thesperm may become increasingly important during theprocess of early embryo development. The observeddifferences in methylation levels in the tissues and thedevelopment stages of P. fucata suggest that DNA methylationmay act as an epigenetic regulator during tissuedifferentiation, individual growth, and development.

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      참고문헌 (Reference)

      1 Baurens FC, "Using SD-AFLP and MSAP to assess CCGG methylation in the banana genome" 21 : 339-348, 2003

      2 Daxinger L, "Understanding transgenerational epigenetic inheritance via the gametes in mammals" 13 : 153-162, 2012

      3 Jones PA, "The role of DNA methylation in mammalian epigenetics" 293 : 1068-1070, 2001

      4 Jiang L, "Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos" 153 : 773-784, 2013

      5 Liu WG, "Seawater acidification and elevated temperature affect gene expression patterns of the pearl oyster Pinctada fucata" 7 : e33679-, 2012

      6 Li E, "Role for DNA methylation in genomic imprinting" 366 : 362-365, 1993

      7 Finnegan EJ, "Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development" 93 : 8449-8454, 1996

      8 He MX, "Realized heritability and response to selection for shell height in the pearl oyster Pinctada fucata (Gould)" 39 : 801-805, 2008

      9 Mohandas T, "Reactivation of an inactive human X chromosome: evidence for X inactivation by DNA methylation" 211 : 393-396, 1981

      10 Gavery MR, "Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc" 1 : e215-, 2013

      1 Baurens FC, "Using SD-AFLP and MSAP to assess CCGG methylation in the banana genome" 21 : 339-348, 2003

      2 Daxinger L, "Understanding transgenerational epigenetic inheritance via the gametes in mammals" 13 : 153-162, 2012

      3 Jones PA, "The role of DNA methylation in mammalian epigenetics" 293 : 1068-1070, 2001

      4 Jiang L, "Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos" 153 : 773-784, 2013

      5 Liu WG, "Seawater acidification and elevated temperature affect gene expression patterns of the pearl oyster Pinctada fucata" 7 : e33679-, 2012

      6 Li E, "Role for DNA methylation in genomic imprinting" 366 : 362-365, 1993

      7 Finnegan EJ, "Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development" 93 : 8449-8454, 1996

      8 He MX, "Realized heritability and response to selection for shell height in the pearl oyster Pinctada fucata (Gould)" 39 : 801-805, 2008

      9 Mohandas T, "Reactivation of an inactive human X chromosome: evidence for X inactivation by DNA methylation" 211 : 393-396, 1981

      10 Gavery MR, "Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc" 1 : e215-, 2013

      11 Xiong L, "Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique" 261 : 439-446, 1999

      12 Pontecorvo G, "Novel methylation at GpC dinucleotide in the fish Sparus aurata genome" 27 : 225-230, 2000

      13 Miyazaki T, "Mass mortalities associated with a virus disease in Japanese pearl oysters Pinctada fucata martensii" 37 : 1-12, 1999

      14 Yu DH, "Low genetic differentiation among widely separated populations of the pearl oyster Pinctada fucata as revealed by AFLP" 333 : 140-146, 2006

      15 Field LM, "Insecticide resistance in the aphid Myzus persicae (Sulzer): chromosome location and epigenetic effects on esterase gene expression in clonal lineages" 79 : 107-113, 2003

      16 Fulneček J, "How to interpret methylation sensitive amplified polymorphism (MSAP) profiles?" 15 : 2-, 2014

      17 Hulata G, "Genetic manipulations in aquaculture: a review of stock improvement by classical and modern technologies" 111 : 155-173, 2001

      18 Qun Jiang, "Genetic and epigenetic variation in mass selection populations of Pacific oyster Crassostrea gigas" 한국유전학회 35 (35): 641-647, 2013

      19 Colot V, "Eukaryotic DNA methylation as an evolutionary device" 21 : 402-411, 1999

      20 Reik W, "Epigenetic reprogramming in mammalian development" 293 : 1089-1093, 2001

      21 Wada KT, "Effect of selection for shell coloration on growth rate and mortality in the Japanese pearl oyster, Pinctada fucata martensii" 125 : 59-65, 1994

      22 Reyna-Lopez G, "Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms" 253 : 703-710, 1997

      23 Wang AM, "Development of expressed sequence tags from the pearl oyster, Pinctada martensii Dunker" 13 : 275-283, 2011

      24 Wu SZ, "Development of 25 novel microsatellite loci and genetic variation analysis in breeding populations of the pearl oyster, Pinctada fucata" 44 : 600-609, 2013

      25 Lei H, "De novo DNA cytosine methyltransferase activities in mouse embryonic stem cells" 122 : 3195-3205, 1996

      26 Finnegan EJ, "DNA methylation, a key regulator of plant development and other processes" 10 : 217-223, 2000

      27 Li A, "DNA methylation status is associated with the formation of heterosis in Larix kaempferi intraspecific hybrids" 31 : 463-475, 2013

      28 Gavery MR, "DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas)" 11 : 483-, 2010

      29 Riviere G, "DNA methylation is crucial for the early development in the oyster C. gigas" 15 : 739-753, 2013

      30 Ruiz-García L, "DNA methylation increases throughout Arabidopsis development" 222 : 301-306, 2005

      31 Finnegan EJ, "DNA methylation in plants" 49 : 223-247, 1998

      32 Razin A, "DNA methylation and gene function" 210 : 604-610, 1980

      33 Clark SJ, "CpNpG methylation in mammalian cells" 10 : 20-27, 1995

      34 Suzuki MM, "CpG methylation is targeted to transcription units in an invertebrate genome" 17 : 625-631, 2007

      35 Wada KT, "Color and weight of pearls produced by grafting the mantle tissue from a selected population for white shell color of the Japanese pearl oyster Pinctada fucata martensii (Dunker)" 142 : 25-32, 1996

      36 Sha AH, "Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis" 273 : 484-490, 2005

      37 Yang C, "Analysis of DNA methylation in various swine tissues" 6 : e16229-, 2011

      38 Lu YL, "Analysis of DNA methylation in different maize tissues" 35 : 41-48, 2008

      39 Cervera MT, "Analysis of DNA methylation in Arabidopsis thaliana based on methylationsensitive AFLP markers" 268 : 543-552, 2002

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      연월일 이력구분 이력상세 등재구분
      2023 평가예정 해외DB학술지평가 신청대상 (해외등재 학술지 평가)
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      2008-04-14 학술지명변경 외국어명 : Korean Journal of Genetics -> Genes and Genomics KCI등재
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      2004-01-01 평가 등재학술지 선정 (등재후보2차) KCI등재
      2003-01-01 평가 등재후보 1차 PASS (등재후보1차) KCI등재후보
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      학술지 인용정보

      학술지 인용정보
      기준연도 WOS-KCI 통합IF(2년) KCIF(2년) KCIF(3년)
      2016 0.51 0.12 0.38
      KCIF(4년) KCIF(5년) 중심성지수(3년) 즉시성지수
      0.32 0.27 0.258 0.02
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