Dual graph-regularized Constrained Nonnegative Matrix Factorization for Image Clustering

( Jing Sun ),( Xibiao Cai ),( Fuming Sun ),( Richang Hong ) 한국인터넷정보학회 2017 KSII Transactions on Internet and Information Syst Vol.11 No.5

Nonnegative matrix factorization (NMF) has received considerable attention due to its effectiveness of reducing high dimensional data and importance of producing a parts-based image representation. Most of existing NMF variants attempt to address the assertion that the observed data distribute on a nonlinear low-dimensional manifold. However, recent research results showed that not only the observed data but also the features lie on the low-dimensional manifolds. In addition, a few hard priori label information is available and thus helps to uncover the intrinsic geometrical and discriminative structures of the data space. Motivated by the two aspects above mentioned, we propose a novel algorithm to enhance the effectiveness of image representation, called Dual graph-regularized Constrained Nonnegative Matrix Factorization (DCNMF). The underlying philosophy of the proposed method is that it not only considers the geometric structures of the data manifold and the feature manifold simultaneously, but also mines valuable information from a few known labeled examples. These schemes will improve the performance of image representation and thus enhance the effectiveness of image classification. Extensive experiments on common benchmarks demonstrated that DCNMF has its superiority in image classification compared with state-of-the-art methods.

Research and Simulation on the Performance of Multi-User Detection for MC-CDMA System

Xingpei Wu,Qiong Wang,Xibiao Cai,Meng Li 보안공학연구지원센터 2015 International Journal of Future Generation Communi Vol.8 No.2

The paper makes a brief introduction of Multiple Carrier- Code Division Multiple Access (MC-CDMA) scheme based on the principles of Orthogonal Frequency Division Multiplexing (OFDM) and CDMA, and a mathematical model of the uplink is established in MC-CDMA system. The simulation research on different multi-user detection methods in MC-CDMA system is implemented by using MATLAB software, and it also compares the impacts to system performance by several different multi-user detection methods, such as De-Correlation (DEC) multi-user detection, Minimum Mean Square Error (MMSE) multi-user detection and Parallel Interference Cancellation (PIC) multi-user detection, based on understanding and analyzing the experimental results. In addition, the paper also focuses on the research of multi level PIC multi-user detection performance in different primary detection methods and different series detections.

Characterization of porcine cytokine inducible SH2-containing protein gene and its association with piglet diarrhea traits

Buyue Niu,Dongchun Guo,Zhiran Liu,Xiaofei Han,Xibiao Wang 아세아·태평양축산학회 2017 Animal Bioscience Vol.30 No.12

Objective: The cytokine inducible SH2-containing protein (CISH), which might play a role in porcine intestine immune responses, was one of the promising candidate genes for piglet anti-disease traits. An experiment was conducted to characterize the porcine CISH (pCISH) gene and to evaluate its genetic effects on pig anti-disease breeding. Methods: Both reverse transcription polymerase chain reaction (RT-PCR) and PCR were performed to obtain the sequence of pCISH gene. A pEGFP-C1-CISH vector was constructed and transfected into PK-15 cells to analysis the distribution of pCISH. The sequences of individuals were compared with each other to find the polymorphisms in pCISH gene. The association analysis was performed in Min pigs and Landrace pigs to evaluate the genetic effects on piglet diarrhea traits. Results: In the present research, the coding sequence and genomic sequence of pCISH gene was obtained. Porcine CISH was mainly localized in cytoplasm. TaqI and HaeIII PCR restriction fragment length polymorphism (RFLP) assays were established to detect single nucleotide polymorphisms (SNPs); A-1575G in promoter region and A2497C in Intron1, respectively. Association studies indicated that SNP A-1575G was significantly associated with diarrhea index of Min piglets (p<0.05) and SNP A2497C was significantly associated with the diarrhea trait of both Min pig and Landrace piglets (p<0.05). Conclusion: This study suggested that the pCISH gene might be a novel candidate gene for pig anti-disease traits, and further studies are needed to confirm the results of this preliminary research.

Single nucleotide polymorphism-based analysis of the genetic structure of the Min pig conserved population

Meng Fanbing,Cai Jiancheng,Wang Chunan,Fu Dechang,Di Shengwei,Wang Xibiao,Chang Yang,Xu Chunzhu 아세아·태평양축산학회 2022 Animal Bioscience Vol.35 No.12

Objective: The study aims to uncover the genetic diversity and unique genetic structure of the Min pig conserved population, divide the nucleus conservation population, and construct the molecular pedigree. Methods: We used KPS Porcine Breeding Chip v1 50K for SNP detection of 94 samples (31♂, 63♀) in the Min pig conserved population from Lanxi breeding Farm. Results: The polymorphic marker ratio (PN), the observed heterozygosity (Ho), and the expected heterozygosity (He) were 0.663, 0.335, and 0.330, respectively. The pedigreebased inbreeding coefficients (FPED) was significantly different from those estimated from runs of homozygosity (FROH) and single nucleotide polymorphism (FSNP) based on genome. The Pearson correlation coefficient between FROH and FSNP was significant (p<0.05). The effective population content (Ne) showed a continuously decreasing trend. The rate of decline was the slowest from 200 to 50 generations ago (r = 0.95), then accelerated slightly from 50 to 5 generations ago (1.40<r<1.50) and increased significantly in the last 5 generations (r = 2.6). According to the composition of Chinese lineage, we separated the nucleus conservation population (81 individuals) and the candidate conservation population (13 individuals) of Min pig, then the nucleus conservation population of Min pig was divided into 9 families by genomic information matrix. Conclusion: Our study indicated that the genetic diversity of the Min pig conserved population was inadequate. Due to the introgression of European commercial pig breeds and the unscientific breeding process, it is necessary to construct the molecular pedigree of the nucleus conservation population for the Min pig. Objective: The study aims to uncover the genetic diversity and unique genetic structure of the Min pig conserved population, divide the nucleus conservation population, and construct the molecular pedigree.Methods: We used KPS Porcine Breeding Chip v1 50K for SNP detection of 94 samples (31♂, 63♀) in the Min pig conserved population from Lanxi breeding Farm.Results: The polymorphic marker ratio (PN), the observed heterozygosity (Ho), and the expected heterozygosity (He) were 0.663, 0.335, and 0.330, respectively. The pedigree-based inbreeding coefficients (F_PED) was significantly different from those estimated from runs of homozygosity (F_ROH) and single nucleotide polymorphism (FSNP) based on genome. The Pearson correlation coefficient between F_ROH and F_SNP was significant (p<0.05). The effective population content (Ne) showed a continuously decreasing trend. The rate of decline was the slowest from 200 to 50 generations ago (r = 0.95), then accelerated slightly from 50 to 5 generations ago (1.40<r<1.50) and increased significantly in the last 5 generations (r = 2.6). According to the composition of Chinese lineage, we separated the nucleus conservation population (81 individuals) and the candidate conservation population (13 individuals) of Min pig, then the nucleus conservation population of Min pig was divided into 9 families by genomic information matrix.Conclusion: Our study indicated that the genetic diversity of the Min pig conserved population was inadequate. Due to the introgression of European commercial pig breeds and the unscientific breeding process, it is necessary to construct the molecular pedigree of the nucleus conservation population for the Min pig.