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      • SCIESCOPUSKCI등재

        Subfertility Problems Leading to Disposal of Breeding Bulls

        Khatun, Marzina,Kaur, Simarjeet,Simarjeet, Simarjeet,Mukhopadhyay, C.S. Asian Australasian Association of Animal Productio 2013 Animal Bioscience Vol.26 No.3

        Subfertility problems are encountered frequently in the cattle and buffalo bulls commercially maintained for semen production in dairy farms and under field conditions for natural insemination. Reports are scarce on the incidence of subfertility in breeding bulls, especially in India. The objective of the present study was to assess the incidence of the male reproductive anomalies leading to disposal of bovine bulls at GADVASU dairy farm, Ludhiana, Punjab (India). Data on frequency of various subfertility and disposal pattern of bulls maintained at the dairy farm, GADVASU, were collected for 12 yrs (1999 to 2010) and compiled from different record registers. Percentage of bulls that produced freezable semen (out of reserved ones) was less in cattle (25.641%) as compared to that of buffalo (30.4%). Various subfertility traits like poor libido and unacceptable seminal profile were found to be the significant reasons (p<0.01) for culling of the breeding bulls. Inadequate sex drive and poor semen quality were the main contributing factors for bull disposal in cattle whereas poor semen freezability was most frequently observed in buffalo bulls. All the male reproductive traits were significantly different (p<0.05) for the periods of birth, except for semen volume, initial motility (IM), age at last semen collection (ALSC) and age at disposal. The ages at first and last semen collection as well as freezing (i.e. AFSC, ALSC and AFSF, ALSF, respectively) and age at disposal (AD) were higher in buffalo. The spermatological parameters and semen production period (SPP) were higher in cattle. The age at first semen donation and breeding period could be reduced by introducing the bulls to training at an early age. The results revealed an increasing trend in individual motility (IM) while semen volume, AFSC, AFSF, AD, FSPP, SPP, ALSC and ALSF showed a decreasing, however, not a definite trend, over the periods. The semen donation traits like, AFSF, of the cattle and buffalo bulls could be predicted from the AFSC, using prediction equation derived in the present study.

      • SCISCIESCOPUS

        Simultaneous Measurement of Refractive Index, Temperature, and Strain Using Etched-Core Fiber Bragg Grating Sensors

        Sang-Mae Lee,Saini, Simarjeet S,Myung-Yung Jeong IEEE 2010 IEEE photonics technology letters Vol.22 No.19

        <P>This study demonstrates simultaneous measurement of three parameters viz. refractive index of surrounding medium, temperature, and strain using etched-core fiber Bragg grating sensors. Simultaneous measurement is achieved by exciting higher order modes in the sensor using an asymmetric nonadiabatic taper and measuring difference in their Bragg wavelength shifts due to different parameters. In order to simultaneously measure three parameters, three different order modes were excited in the sensor. The ability to measure multiple parameters is useful in bio-chemical measurements as it allows us to compensate for the change in Bragg wavelength with respect to change in temperature or strain. Thus, the sensors do not need to be stabilized.</P>

      • KCI등재

        Biocomputational Characterization and Evolutionary Analysis of Bubaline Dicer1 Enzyme

        Jasdeep Singh,Changdra Sekhar Mukhopadhyay,Jaspreet Singh Arora,Simarjeet Kaur 아세아·태평양축산학회 2015 Animal Bioscience Vol.28 No.6

        Dicer, an ribonuclease type III type endonuclease, is the key enzyme involved in biogenesis of microRNAs (miRNAs) and small interfering RNAs (siRNAs), and thus plays a critical role in RNA interference through post transcriptional regulation of gene expression. This enzyme has not been well studied in the Indian water buffalo, an important species known for disease resistance and high milk production. In this study, the primary coding sequence (5,778 bp) of bubaline dicer (GenBank: AB969677.1) was determined and the bubaline Dicer1 biocomputationally characterized to determine the phylogenetic signature among higher eukaryotes. The evolutionary tree revealed that all the transcript variants of Dicer1 belonging to a specific species were within the same node and the sequences belonging to primates, rodents and lagomorphs, avians and reptiles formed independent clusters. The bubaline dicer1 is closely related to that of cattle and other ruminants and significantly divergent from dicer of lower species such as tapeworm, sea urchin and fruit fly. Evolutionary divergence analysis conducted using MEGA6 software indicated that dicer has undergone purifying selection over the time. Seventeen divergent sequences, representing each of the families/taxa were selected to study the specific regions of positive vis-à-vis negative selection using different models like single likelihood ancestor counting, fixed effects likelihood, and random effects likelihood of Datamonkey server. Comparative analysis of the domain structure revealed that Dicer1 is conserved across mammalian species while variation both in terms of length of Dicer enzyme and presence or absence of domain is evident in the lower organisms.

      • SCIESCOPUSKCI등재

        Biocomputational Characterization and Evolutionary Analysis of Bubaline Dicer1 Enzyme

        Singh, Jasdeep,Mukhopadhyay, Chandra Sekhar,Arora, Jaspreet Singh,Kaur, Simarjeet Asian Australasian Association of Animal Productio 2015 Animal Bioscience Vol.28 No.6

        Dicer, an ribonuclease type III type endonuclease, is the key enzyme involved in biogenesis of microRNAs (miRNAs) and small interfering RNAs (siRNAs), and thus plays a critical role in RNA interference through post transcriptional regulation of gene expression. This enzyme has not been well studied in the Indian water buffalo, an important species known for disease resistance and high milk production. In this study, the primary coding sequence (5,778 bp) of bubaline dicer (GenBank: AB969677.1) was determined and the bubaline Dicer1 biocomputationally characterized to determine the phylogenetic signature among higher eukaryotes. The evolutionary tree revealed that all the transcript variants of Dicer1 belonging to a specific species were within the same node and the sequences belonging to primates, rodents and lagomorphs, avians and reptiles formed independent clusters. The bubaline dicer1 is closely related to that of cattle and other ruminants and significantly divergent from dicer of lower species such as tapeworm, sea urchin and fruit fly. Evolutionary divergence analysis conducted using MEGA6 software indicated that dicer has undergone purifying selection over the time. Seventeen divergent sequences, representing each of the families/taxa were selected to study the specific regions of positive vis-$\grave{a}$-vis negative selection using different models like single likelihood ancestor counting, fixed effects likelihood, and random effects likelihood of Datamonkey server. Comparative analysis of the domain structure revealed that Dicer1 is conserved across mammalian species while variation both in terms of length of Dicer enzyme and presence or absence of domain is evident in the lower organisms.

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