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Population Structure of Mungbean Accessions Collected from South and West Asia using SSR markers
Khandakar Md. Rayhanul Kabir,Yong Jin Park 한국육종학회 2011 한국육종학회지 Vol.43 No.1
In this study, 15 simple sequence repeat (SSR) markers were used to analyze the population structure of 55 mungbean accessions (34 from South Asia, 20 from West Asia, 1 sample from East Asia). A total of 56 alleles were detected, with an average of 3.73 per locus. The mean of major allele frequency, expected heterozygosity and polymorphic information content for 15 SSR loci were 0.72, 0.07 and 0.33 respectively. The mean of major allele frequency was 0.79 for South Asia, and 0.74 for West Asia. The mean of genetic diversity and polymorphic information content were almost similar for South Asian and West Asian accessions (genetic diversity 0.35 and polymorphic information content 0.29). Model-based structure analysis revealed the presence of three clusters based on genetic distance. Accessions were clearly assigned to a single cluster in which >70% of their inferred ancestry was derived from one of the model-based populations. 47 accessions (85.56%) showed membership with the clusters and 8 accessions (14.54%) were categorized as admixture. The results could be used to understanding the genetic structure of mungbean cultivars from these regions and to support effective breeding programs to broaden the genetic basis of mungbean varieties.
In vitro anther culture of Chrysanthemum (Dendranthema ssp.)
Khandakar Md. Rayhanul Kabir,Woo Ju Hong,Yong-Jin Park 한국육종학회 2013 한국육종학회 심포지엄 Vol.2013 No.07
This study was set up to get plants from anther culture of Chrysanthemum (Dendranthema grandiflorum) gardenmum cultivar “Yes Morning’ and potmum cultivar “Peace Pink” for breeding program. The induction of callus was quick and high on MS basal medium supplemented with 1.0 mg/L of 2,4-D + 2.0 mg/L of 6-BA + 4% W/V sucrose. Induction potential was slightly increased by addition of 250 mg/L Casein hydrolysate to the induction medium. Calluses were allowed to differentiate on MS basal medium + 2.0 mg/L of BA + 0.1 mg/L of NAA + 3%W/V sucrose. The rate of callus formation differed little between the cultivars. A pretreatment of anthers at 4℃ for 48h enhanced both the induction and differentiation ratio. Multiple shoots were initiated from most of the calluses and were shifted to MS basal medium + 0.1 mg/L of NAA + 3%W/V sucrose for rooting. Regenerated plantlets were acclimatized and transferred to the soil. Some of the regenerated plants showed slow growth with little morphological difference.
라원희,연경호,Khandakar M.D. Rayhanul Kabir,조유현,권순욱,박용진 한국육종학회 2012 한국육종학회 심포지엄 Vol.2012 No.07
최근 생물다양성 협약의 발효로 유전자원 사용에 제한이 있게 되면서 국내 재래종 유전자원에 대한 유전변이 평가를 통한 육종소재로 활용 가능한 유용유전자원 확보는 대단히 중요한 과제로 대두 되었다. 그 중 벼 육종에 있어서 도열병 저항성은 재배안전성 측면에서 가장 중요한 형질 중의 한가지로서 많이 연구 되었는데 효율적인 수단으로는 저항성이 증대된 신품종을 육종하는 것이 가장 효율적인 방법이라고 할 수 있다. 본 연구에서는 국내 재래종 벼 품종들에 대해 주요 도열병 저항성 유전자를 탐색 하고 재래종 벼의 유전적 특성을 분석하여 벼 품종육성의 기초자료로 제공하고자 수행하였다. 선행연구에서 보고된 도열병 유전자 정보를 이용하여 국내 재래종 벼를 대상으로 분석한 결과, 홍도, 홍사도, 사두초, 앵미, 효성재래종, 적선, 선, 한양조, 백곡나 등에서 Pi-b 저항성 유전자가 탐색 되었다. 추후 국내 재래종 유전자원은 병저항성 육성 소재로 활용 가능할 것으로 생각된다.
The Effect of Financial Development, Tariff, and RTA on Exports: A Structural Gravity Analysis
Syed Nazrul Islam,Md. Shariful Islam,Md. Rayhanul Islam,Md. Ashraful Alam 세종대학교 경제통합연구소 2024 Journal of Economic Integration Vol.39 No.1
This paper examines the effect of financial development (FD), tariffs, and RTA on bilateral exports in a structural gravity framework. Applying high-dimensional fixed effects in OLS and PPML estimation technique in a panel framework covering 169 countries over 2001-2017, this paper finds that FD of both exporters and importers are an important determinant for boosting exports. The EIA has the most trade creation effect than any other form of RTA. Importers' FD has a larger effect on bilateral exports for developed to developed and developed and developing country trade than that of the exporters. The trade between developing to developing countries is positively affected by both exporters' and importers' FD; and negatively to a larger extent by tariff measures. However, in the case of developing and developed country estimation, FD of the exporter country is significantly affecting bilateral trade. Tariffs significantly distort trade, largely between developing and developed countries.
DNA barcoding and phylogenetic analysis in Chrysanthemum
WooJu Hong,Gang Li,Ayeaye Khaing,Khandakar M.D. Rayhanul Kabir,Yong-Jin Park 한국육종학회 2012 한국육종학회 심포지엄 Vol.2012 No.07
The plant family chrysanthemum is known for its medicinal, ornamental, and economic purposes. Owing to its economic and biological significance to the difficult identification based on morphological characters, it is useful to develop DNA barcodes. DNA sequence data enable not only the inference of phylogenetic relationships but also provide an efficient method for species-level identifications under terms DNA barcoding or DNA taxonomy. The purpose of this study is to evaluate the utility of DNA barcoding in discriminating Chrysanthemum species. Four cpDNA regions (matK, rpoC, rpoB, trnH-psbA) and one nuclear (ITS) marker have sequenced from 28 specimens of 11 species from 4 genera of Chrysanthemum which were collected from 5 provinces in Korea. Comparisons of within and between species levels of sequence divergence showed that genetic variation between species exceeds variation within species.
Fu-Hao Lu,Cheol-Soon Park,Kyeong-Ho Yeon,Khandakar M.D. Rayhanul Kabir,Won-Hee Ra,Soon-Wook Kwon,Yong-Jin Park 한국육종학회 2012 한국육종학회 심포지엄 Vol.2012 No.07
Allele mining in starch synthesis-related genes (SSRGs) has facilitated the discovery of desired natural sequence variations for eating quality in rice. This study investigated the sequence variations from 10 SSRGs, and further evaluated their relationship with the amylose content (AC) and rapid viscosity analysis profiles in a global collection of rice accessions by association mapping (AM). In total, 83 sequence variations were found in 10 sequenced amplicons, including 73 single nucleotide polymorphisms (SNPs), eight insertion-deletions (InDels) and two polymorphic simple sequence repeats (SSRs). Four subpopulations were identified by population structure analysis based on 170 genome-wide SSR genotypes. AM revealed 11 significant associations between three phenotypic indices and three sequence variations. One SNP with a g/c transversion at the 63rd nucleotide downstream of the OsBEIIb gene termination codon on rice chromosome 2 was significantly associated with multiple trait indices in both the general linear and mixed linear models (GLM and MLM), including the final viscosity (p < 0.001, R2 = 23.87%) in both 2009 and 2010, and AC (p < 0.01, R2 = 11.25%) and trough viscosity (p < 0.01, R2 = 20.43) in 2010. This study provides a new perspective of allele mining for breeding strategies based on marker-assisted selection.
Qiang He,Byung-Kook Yun,Min-Young Yoon,Xiao-Qiang Wang,Feng-Peng Li,Aye-Aye Khaing,Won-Hee Ra,Win Htet Oo,Cheol-Soon Park,Sun-Kyung Min,Wei Tong,Jie Yu,Bu-Woong Choi,Eun-Beom Heo,Khandakar Md.Rayhanul 한국육종학회 2014 한국육종학회 심포지엄 Vol.2014 No.07
As one of the most important crop, rice is not only a staple food of half world’s population but a wonderful model plant, which has been leading the evolution and functional genomics study. The next-generation sequencing technology are expediting rice genomic study, by providing a simple but powerful way. In this study, we re-sequenced a core collection of 137 rice accessions from all over the world along with 158 Korean breeding varieties. Finally, 6.3G uniquely mapped reads were obtained, and about 10 million SNPs and ~1.2 million InDels were identified with average sequencing depth of 7.5X. These will help us to maximize our germplasm utilization and assists all the deep research in population dynamics and functional studies. Here, we’d like to show the approaches applied to resequencing data mining and on-going activities.