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Chini Deep Sankar,Mondal Niladri,Kar Avijit,Bunholi Ingrid,Singh Sourav,Ghosh Pratik,Patra Prasanta,Patra Shampa,Patra Bidhan Chandra 한국해양과학기술원 2023 Ocean science journal Vol.58 No.2
Marine fishes are one of the important factors in stabilizing the local aquatic ecosystem and regulating the nutritional socioeconomy of local fisher folks. The recent increases in anthropogenic activity, pollution and overfishing have led to the decline of marine fish species richness and their local aquatic habitats. In this study we sought to determine the inter-relationship between water quality, anthropogenic activity, and fish landing stations through a 31 km stretch of the East Midnapore coast in West Bengal, India which is known for its tourist destinations. The study was conducted monthly on different trawler fish landing sites from Dec 2018 to Dec 2021. During this period, we took fish samples and identified them. We obtained water quality data regarding Sea Surface Temperature (SST), Concentration of Chlorophyll-a (Chl-a), Turbidity, and Dissolved Oxygen (DO) in order to identify further correlation between the water quality analysis and species diversity. 154 numbers of commercially important marine fish species were documented. As per the IUCN database, 13% of the total fish species fall under the red list category and 16% of the species reveal a decreasing population trend. The availability of those red-listed fish throughout the season has been shown in the matrix plot to detect their gradual decrease in sighting. After analyzing the water quality data, we found out that DO, SST, Turbidity, and Chl-a correlate with the species richness on some sites and the water parameters are also differs during the seasons. Both fish species richness and water quality have been affected on those fish landing sites which have been subject to heavy anthropogenic loads.
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Tethering Meat Goats Grazing Forage of High Nutritive Value and Low to Moderate Mass
Patra, A.K.,Puchala, R.,Detweiler, G.,Dawson, L.J.,Animut, G.,Sahlu, T.,Goetsch, A.L. Asian Australasian Association of Animal Productio 2008 Animal Bioscience Vol.21 No.9
Twenty-four yearling Boer$\times$Spanish goats were used in a crossover design experiment to determine effects of tethering on forage selection, intake and digestibility, grazing behavior and energy expenditure (EE) with forage high in nutritive value and low to moderate in mass. Objectives were to determine if tethered goats could be used as a model for study of unrestrained animals and to characterize tethering as a production practice. Four 0.72-ha pastures of wheat (Triticum aestivum) and berseem clover (Trifolium alexandrium) were grazed in December and January. Each pasture hosted six animals, three with free movement and three attached to a 4.11-m tether for access to a circular area of $53.1m^2$. Tethering areas were moved each day. One animal of each treatment and pasture was used to determine forage selection, fecal output or grazing behavior and EE; therefore, there were eight observations per treatment. Mass of forage DM before grazing in Tethered areas averaged 1,280 and 1,130 kg/ha in periods 1 and 2, respectively. The CP concentration in ingesta was greater ((p<0.05) 239 and 209 g/kg; SE = 8.0) and the NDF level was lower (p<0.05) for Free vs. Tethered animals (503 and 538 g/kg; SE = 12.0); in vitro true DM digestion was similar between treatments (0.808 and 0.807 for Free and Tethered, respectively; SE = 0.0096). Intakes of DM (1,013 and 968 g/d; SE = 78.6), NDF (511 and 521 g/d; SE = 39.9) and ME (10.9 and 10.7 MJ/d; SE = 0.90) were similar between treatments, but CP intake was greater (p<0.05) for Free vs. Tethered animals (241 and 203 g/d; SE = 17.2). There were small treatment differences in in vivo apparent digestibility of OM ((p<0.05) 0.780 and 0.814; SE = 0.0049), CP ((p<0.05) 0.800 and 0.817; SE = 0.0067) and NDF ((p<0.09) 0.777 and 0.760 for Free and Tethered, respectively; SE = 0.0078). There were no treatment effects on time spent ruminating or grazing (346 and 347 min/d for Free and Tethered, respectively; SE = 42.5), but EE was considerably greater (p<0.05) for Free vs. Tethered animals (571 and 489 kJ/kg $BW^{0.75}$; SE = 8.9). In conclusion, with forage of high nutritive value and low to moderate in mass, tethering can offer a production advantage over free grazing of less energy used for activity despite similar grazing time. With forage removal considerably less than that available for grazing, effects of tethering on chemical composition of selected forage were small and less than needed to markedly affect digestion. Tethering may offer a means of studying some aspects of grazing by ruminants, but would not seem suitable for energy metabolism.
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Patra, N.,De, U.,Kim, T.H.,Lee, Y.J.,Ahn, M.Y.,Kim, N.D.,Yoon, J.H.,Choi, W.S.,Moon, H.R.,Lee, B.M.,Kim, H.S. Masson Pub. USA, Inc 2013 Biomedicine & pharmacotherapy Vol.67 No.5
Histone deacetylase (HDAC) inhibitors are a new class of anticancer agents that act by inhibiting cancer cell proliferation and inducing apoptosis in various cancer cell lines. To investigate the anticancer effect of a novel histone deacetylase (HDAC) inhibitor MHY219, its efficacy was compared to that of suberoylanilide hydroxamic acid (SAHA) in human prostate cancer cells. The anticancer effects of MHY219 on cell viability, HDAC enzyme activity, cell cycle regulation, apoptosis and other biological assays were performed. MHY219 was shown to enhance the cytotoxicity on DU145 cells (IC<SUB>50</SUB>, 0.36μM) when compared with LNCaP (IC<SUB>50</SUB>, 0.97μM) and PC3 cells (IC<SUB>50</SUB>, 5.12μM). MHY219 showed a potent inhibition of total HDAC activity when compared with SAHA. MHY219 increased histone H3 hyperacetylation and reduced the expression of class I HDACs (1, 2 and 3) in prostate cancer cells. MHY219 effectively increased the sub-G1 fraction of cells through p21 and p27 dependent pathways in DU145 cells. MHY219 significantly induced a G2/M phase arrest in DU145 and PC3 cells and arrested the cell cycle at G0/G1 phase in LNCaP cells. Furthermore, MHY219 effectively increased apoptosis in DU145 and LNCaP cells, but not PC3 cells, according to Annexin V/PI staining and Western blot analysis. These results indicate that MHY219 is a potent HDAC inhibitor that targets regulating multiple aspects of cancer cell death and might have preclinical value in human prostate cancer chemotherapy, warranting further investigation.
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Patra, Rakesh Kumar,Mukharjee, Bibhuti Bhusan Techno-Press 2016 Advances in concrete construction Vol.4 No.4
Several types of industrial byproducts are generated. With increased environmental awareness and its potential hazardous effects, the utilization of industrial byproducts in concrete has become an attractive alternative to their disposal. One such by-product is ground granulated blast furnace slag (GGBS), which is a byproduct of the smelting process carried out in the iron and steel industry. The GGBS is very effective in the design and development of high-strength and high-performance concrete. This paper reviews the effect of GGBS on the workability, porosity, compressive strength, splitting tensile strength, and flexural strength of concrete.
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Patra, A.,Kundu, S.,Bhaumik, A.,Kim, D. Royal Society of Chemistry 2016 Nanoscale Vol.8 No.1
<P>We have developed a new green chemical approach for the shape-controlled synthesis of single-crystalline hematite nanocrystals in aqueous medium. FESEM, HRTEM and SAED techniques were used to determine the morphology and crystallographic orientations of each nanocrystal and its exposed facets. PXRD and HRTEM techniques revealed that the nanocrystals are single crystalline in nature; twins and stacking faults were not detected in these nanocrystals. The structural, vibrational, and electronic spectra of these nanocrystals were highly dependent on their shape. Different shaped hematite nanocrystals with distinct crystallographic planes have been synthesized under similar reaction conditions, which can be desired as a model for the purpose of properties comparison with the nanocrystals prepared under different reaction conditions. Here we investigated the photocatalytic performance of these different shaped-nanocrystals for methyl orange degradation in the presence of white light (lambda > 420 nm). In this study, we found that the density of surface Fe3+ ions in particular facets was the key factor for the photocatalytic activity and was higher on the bitruncated-dodecahedron shape nanocrystals by coexposed {104}, {100} and {001} facets, attributing to higher catalytic activity. The catalytic activity of different exposed facet nanocrystals were as follows: {104} + {100} + {001} (bitruncated-dodecahedron) > {101} + {001} (bitruncated-octahedron) > {001} + {110} (nanorods) > {012} (nanocuboid) which provided the direct evidence of exposed facet-driven photocatalytic activity. The nanocrystals were easily recoverable using an external magnet and reused at least six times without significant loss of its catalytic activity.</P>
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Patra Ajit Kumar,Kwon Yong Min,Yang Youngik 한국미생물학회 2022 The journal of microbiology Vol.60 No.9
Siboglinid tubeworms thrive in hydrothermal vent and seep habitats via a symbiotic relationship with chemosynthetic bacteria. Difficulties in culturing tubeworms and their symbionts in a laboratory setting have hindered the study of host-microbe interactions. Therefore, released symbiont genomes are fragmented, thereby limiting the data available on the genome that affect subsequent analyses. Here, we present a complete genome of gammaproteobacterial endosymbiont from the tubeworm Lamellibrachia satsuma collected from a seep in Kagoshima Bay, assembled using a hybrid approach that combines sequences generated from the Illumina and Oxford Nanopore platforms. The genome consists of a single circular chromosome with an assembly size of 4,323,754 bp and a GC content of 53.9% with 3,624 protein-coding genes. The genome is of high quality and contains no assembly gaps, while the completeness and contamination are 99.33% and 2.73%, respectively. Comparative genome analysis revealed a total of 1,724 gene clusters shared in the vent and seep tubeworm symbionts, while 294 genes were found exclusively in L. satsuma symbionts such as transposons, genes for defense mechanisms, and inorganic ion transportations. The addition of this complete endosymbiont genome assembly would be valuable for comparative studies particularly with tubeworm symbiont genomes as well as with other chemosynthetic microbial communities.
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Patra, Ajit Kumar,Cho, Hyun Hee,Kwon, Yong Min,Kwon, Kae Kyoung,Sato, Takako,Kato, Chiaki,Kang, Sung Gyun,Kim, Sang-Jin Korean Ocean Research & Development Institute and 2016 OCEAN SCIENCE JOURNAL Vol.51 No.3
Vestimentiferan tubeworms acquire their symbionts through horizontal transmission from the surrounding environment. In the present study, we constructed a 16S rRNA gene clone library to investigate the phylogenetic relationship between diverse microbes in the sediment and symbiotic bacteria in the trophosome of the tubeworm, Lamellibrachia satsuma, from Kagoshima Bay, Japan. Two symbiotic bacterial phylotypes belonging to the classes <TEX>${\gamma}$</TEX>- and <TEX>${\varepsilon}$</TEX>-Proteobacteria were found from this tubeworm trophosome. They were very closely related to the symbionts of several other marine invertebrates. The most predominant bacteria in the sediment were <TEX>${\varepsilon}$</TEX>-Proteobacteria. A broad diversity of bacteria belonged to non-proteobacterial phyla such as Planctomycetes, Acidobacteria, and Chloroflexi was observed. The presence of sulfur oxidizers (i.e., <TEX>${\varepsilon}$</TEX>-Proteobacteria and <TEX>${\gamma}$</TEX>-Proteobacteria) and sulfur reducers (i.e., <TEX>${\delta}$</TEX>-Proteobacteria) may play a significant role in the sulfur cycle in these habitats and provide multiple sources of nutrition to the cold-seep communities. Closely related clones of <TEX>${\varepsilon}$</TEX>-Proteobacteria symbiont in the species level and of <TEX>${\gamma}$</TEX>-Proteobacteria symbiont in the genus level were found in the surrounding sediment. The similarity of symbiont clones of L. satsuma with other symbionts and free-living bacteria suggests the possibility of opportunistic symbiosis in <TEX>${\varepsilon}$</TEX>-Proteobacteria and the co-evolution of <TEX>${\gamma}$</TEX>-Proteobacteria having occurred after symbiosis with the tubeworms.
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Patra, J.K.,Baek, K.H. Elsevier Sequoia 2017 Journal of photochemistry and photobiology. B, Bio Vol.173 No.-
In this study, a simple, rapid, and eco-friendly green method was introduced to synthesize magnetite iron oxide nanoparticles (Fe<SUB>3</SUB>O<SUB>4</SUB> NPs) using the aqueous extracts of two food processing wastes, namely silky hairs of corn (Zea mays L.) and outer leaves of Chinese cabbage (Brassica rapa L. subsp. pekinensis). The boiled solutions of silky hairs (MH) and outer leaves of Chinese cabbage (CCP) were used to synthesize Fe<SUB>3</SUB>O<SUB>4</SUB> NPs under photo exposed condition. The MH-FeNPs and CCP-FeNPs synthesized via green route were characterized by UV-Vis spectroscopy, field emission scanning electron microscopy (FE-SEM), energy-dispersive X-ray spectroscopy (EDX), Fourier-transform infrared spectroscopy (FT-IR), X-ray diffraction (XRD), differential thermogravimetric (TG/DTG) analysis, and vibrating sample magnetometer (VSM) analysis. The UV-Visible spectra displayed two absorption bands at 325nm and 375mm for the MH-FeNPs, and 325mm and 365mm for the CCP-FeNPs, respectively. The estimated absolute crystallite sizes of the MH-FeNPs and CCP-FeNPs were calculated to be 84.81 and 48.91nm, respectively. VSM analysis revealed that both FeNPs were superparamagnetic in nature. Both FeNPs mixed with kanamycin and rifampicin displayed positive synergistic antibacterial activity against pathogenic foodborne bacteria (9.36-24.42mm inhibition zones), and those mixed with amphotericin b also exerted synergistic anticandidal activity against five different pathogenic Candida species (9.81-17.68mm inhibition zones). Both FeNPs exhibited strong antioxidant activities; therefore, all the properties of the green synthesized MH-FeNPs and CCP-FeNPs using food processing wastes could be beneficial for their potential applications in various fields such as drug delivery, antibacterial and anticandidal drugs, and biomedical fields.
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Patra, Dhananjaya,Lee, Jaehyuk,Lee, Jongbok,Sredojevic, Dusan N.,White, Andrew J. P.,Bazzi, Hassan S.,Brothers, Edward N.,Heeney, Martin,Fang, Lei,Yoon, Myung-Han,Al-Hashimi, Mohammed The Royal Society of Chemistry 2017 Journal of materials chemistry. C, Materials for o Vol.5 No.9
<P>New low band gap copolymers P1-P4, based on thienylenevinylene (TV) and pyrrolo[3,2-d:4,5-d']bisthiazole (PBTz) units composed of different alkyl side chains, such as 2-octyldodecyl (OD), n-hexadecyl (HD), 2-ethylhexyl (EH), and 9-heptadecyl (HD) groups, respectively, have been synthesized and characterized. Electrochemical and optical studies of the copolymers indicated low energy band gaps in the range of 1.40-1.47 eV. Moreover, theoretical calculation with density functional theory (DFT) and time-dependent DFT calculations demonstrated that the energy band gaps, HOMO energy levels and maximum absorption values in the copolymers were in good agreement with the experimental results. The decomposition temperature of all copolymers was measured to be above 340 degrees C by thermogravimetric analysis (TGA), which indicates high thermal stability. Thermally annealed OTFT devices based on P1-P4 thin films demonstrated a range of hole mobilities; thus, the P2 based OTFT device exhibited the highest hole mobility of 0.062 cm(2) V-1 s(-1).</P>
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