Broad-specificity amino acid racemase, a novel non-antibiotic selectable marker for transgenic plants

Yi‑Chia Kuan,Venkatesan Thiruvengadam,Jia‑Shin Lin,Jia‑Hsin Liu,Tsan‑Jan Chen,Hsin‑Mao Wu,Wen‑Ching Wang,Liang‑Jwu Chen 한국식물생명공학회 2018 Plant biotechnology reports Vol.12 No.1

The broad-specificity amino acid racemase (Bsar) from Pseudomonas putida catalyzes the racemization of various amino acids, offering a flexible and feasible platform to develop a new non-antibiotic selectable marker system for plant transformation. In the present study, we demonstrated that a Bsar variant, Bsar-R174K, that is useful as a selectable marker gene in Arabidopsis and rice that were susceptible to l-lysine and D-alanine. The introduction of wild-type Bsar, Bsar-R174K or Bsar-R174A into E. coli lysine or asparagine auxotrophs was able to rescue the growth of these microorganisms in minimal media supplemented with selectable amino acid enantiomers. The transformation of Arabidopsis with Bsar or Bsar variants based on d-alanine selection revealed that Bsar-R174K had the greatest efficiency (2.40%), superior to kanamycin selectionbased transformation (1.10%). Whereas, l-lysine-based selection exhibited lower efficiency for Bsar-R174K (0.17%). The progenies of selected Bsar-R174K transgenic Arabidopsis revealed normal growth properties. In addition, Bsar-R174K transgenic rice was obtained on l-lysine medium with an efficiency of 0.9%, and the progenies of the transgenic rice revealed morphologically normal phenotypes comparable with their wild-type counterparts. This study presents the first report of broad range amino acid racemase Bsar-R174K as a non-antibiotic selectable marker system applied in transgenic plants.

A miR-155–Peli1–c-Rel pathway controls the generation and function of T follicular helper cells

Liu, Wen-Hsien,Kang, Seung Goo,Huang, Zhe,Wu, Cheng-Jang,Jin, Hyun Yong,Maine, Christian J.,Liu, Yi,Shepherd, Jovan,Sabouri-Ghomi, Mohsen,Gonzalez-Martin, Alicia,Xu, Shunbin,Hoffmann, Alexander,Zheng, The Rockefeller University Press 2016 The Journal of experimental medicine Vol.213 No.9

<P>MicroRNA (miRNA) deficiency impairs the generation of T follicular helper (Tfh) cells, but the contribution of individual miRNAs to this phenotype remains poorly understood. In this study, we performed deep sequencing analysis of miRNAs expressed in Tfh cells and identified a five-miRNA signature. Analyses of mutant mice deficient of these miRNAs revealed that miR-22 and miR-183/96/182 are dispensable, but miR-155 is essential for the generation and function of Tfh cells. miR-155 deficiency led to decreased proliferation specifically at the late stage of Tfh cell differentiation and reduced CD40 ligand (CD40L) expression on antigen-specific CD4<SUP>+</SUP> T cells. Mechanistically, miR-155 repressed the expression of Peli1, a ubiquitin ligase that promotes the degradation of the NF-κB family transcription factor c-Rel, which controls cellular proliferation and CD40L expression. Therefore, our study identifies a novel miR-155–Peli1–c-Rel pathway that specifically regulates Tfh cell generation and function.</P>

Ways of money using in China

Yi Liu,Ji-Hong Jeung(정지홍) 한국디자인학회 2008 한국디자인학회 학술발표대회 논문집 Vol.- No.-

Enhancing the penetration stability of plasma jet in liquid by improving the chamber structure

Yi Liu,Yonggang Yu,Shanshan Mang 한국물리학회 2019 Current Applied Physics Vol.19 No.9

Two kinds of chamber structures were designed to improve the penetration stability of plasma jet in the working fluid. They are the cone-truncated chamber with an inclined wall structure and the stepped-wall chamber with an abrupt expanding structure. Based on the experiment, the penetration characteristics of plasma jet in liquid were investigated by the numerical calculation, especially the multiphase flow field structure and the jet penetration stability. In the cone-truncated chamber, the arc-like pressure wave does not evolve into the plane wave like the wave evolution rule in the traditional cylindrical chamber, and an alternating structure of arc-like wave and the plane wave is formed in the stepped-wall chamber. The stability control of stepped wall is more significant than that of inclined wall because the low-pressure vortex formed at the corner of step enhances the radial induction effect. Besides, the stepped-wall structure can restrain the moving randomness of the big vortex's core. The axial expansion speed of plasma jet in the ambient fluid is decreased exponentially and the speed estimation formula was obtained in this work.

Robust Ultrasound Multigate Blood Volume Flow Estimation

Yi Zhang,Jinkai Li,Xin Liu,Dong Chyuan Liu 한국정보처리학회 2019 Journal of information processing systems Vol.15 No.4

Estimation of accurate blood volume flow in ultrasound Doppler blood flow spectrograms is extremelyimportant for clinical diagnostic purposes. Blood volume flow measurements require the assessment of boththe velocity distribution and the cross-sectional area of the vessel. Unfortunately, the existing volume flowestimation algorithms by ultrasound lack the velocity space distribution information in cross-sections of avessel and have the problems of low accuracy and poor stability. In this paper, a new robust ultrasound volumeflow estimation method based on multigate (RMG) is proposed and the multigate technology provides detailinformation on the local velocity distribution. In this method, an accurate double iterative flow velocityestimation algorithm (DIV) is used to estimate the mean velocity and it has been tested on in vivo data fromcarotid. The results from experiments indicate a mean standard deviation of less than 6% in flow velocitieswhen estimated for a range of SNR levels. The RMG method is validated in a custom-designed experimentalsetup, Doppler phantom and imitation blood flow control system. In vitro experimental results show that themean error of the RMG algorithm is 4.81%. Low errors in blood volume flow estimation make the prospect ofusing the RMG algorithm for real-time blood volume flow estimation possible.

Design and Implementation of an e-Catalog using XML

Yi Wen Liu,Jin-Gwon Geum,Byeong-do Kang,Young-Jik Kwon 한국산업정보학회 2006 한국산업정보학회 학술대회논문집 Vol.2006 No.5

Density measurement and equal density temperature of CO2+brine from Dagang - formation from 313 to 363 K

Yi Zhang,Weiwei Jian,Yangchun Zhan,Yongchen Song,Mingjun Yang,Jiafei Zhao,Yu Liu,Weiguo Liu,Yong Shen 한국화학공학회 2015 Korean Journal of Chemical Engineering Vol.32 No.1

Densities of CO2+Dagang - formation brine solution were measured by a magnetic suspension balance(MSB) in the pressure range from (10 to 18) MPa, at the temperatures from (313.15 to 363.15) K and CO2 mass frac-tions at 0, 0.0101, 0.0198 and 0.0299. The experimental results revealed that the solution densities increased linearlywith the increasing pressure and CO2 concentration, while decreasing with the increasing temperatures in the experi-mental range. When the temperature increased from (313.15 to 363.15) K, the slopes of the densities versus (vs.) CO2mass fractions decreased from (0.193 to 0.106) g·cm−3. A correlation equation was developed based on thermody-namic theory and experimental data. The absolute average deviation between the correlation equation and the experi-mental data was 0.05%, and the maximum deviation was 0.37% for the density of CO2+water/brine solution in com-mon geological storage conditions. According to the density of CO2 - free brine and apparent molar volume of CO2 inbrine, the equal density temperature (Te) of CO2+Dagang brine solution was obtained at 464.67 K when pressure is10MPa, which means that the density of brine dissolved with CO2 will be less than that of CO2-free brine when thetemperature is higher than 464.67 K at 10MPa. In this work the formation temperature of the Dagang oilfield reser-voir is from 313.15 K to 363.15 K, which is lower than the equal density temperature. Therefore, the safety of CO2 stor-age in Dagang oilfield reservoir can be guaranteed.

Dipeptidyl peptidase IV inhibitor attenuates kidney injury in streptozotocin-induced diabetic rats.

Liu, Wei Jing,Xie, Shu Hua,Liu, Yu Ning,Kim, Won,Jin, Heung Yong,Park, Sung Kwang,Shao, Yi Ming,Park, Tae Sun Williams Wilkins 2012 The Journal of Pharmacology and Experimental Thera Vol.340 No.2

<P>Dipeptidyl peptidase (DPP) IV inhibitors are probably beneficial for preventing diabetic complication and modulating glucagon-like peptide-1 receptor (GLP-1R) expression. The aim of this study was to determine whether the DPP IV inhibitor LAF237 (vildagliptin) has renoprotective qualities in streptozotocin-induced diabetic rats. Diabetic and nondiabetic rats were treated with an oral dose of 4 or 8 mg/kg/day LAF237 or placebo for 24 weeks, and renal injury was observed by light and electron microscopy. We also assessed DPP IV activity, active GLP-1 level, cAMP and 8-hydroxy-deoxyguanosine excretion, and GLP-1R, cleaved caspase 3, and transforming growth factor-β1 (TGF-β1) expression. LAF237 significantly decreased proteinuria, albuminuria, and urinary albumin/creatinine ratio, improved creatinine clearance, and dose-dependently inhibited interstitial expansion, glomerulosclerosis, and the thickening of the glomerular basement membrane in diabetic rats. It is noteworthy that LAF237 markedly down-regulated DPP IV activity and increased active GLP-1 levels, which probably prevented oxidative DNA damage and renal cell apoptosis by activating the GLP-1R and modulating cAMP. Renoprotection was also associated with a reduction in TGF-β1 overexpression. Our study suggests that DPP IV inhibitors may ameliorate diabetic nephropathy as well as reduce the overproduction of TGF-β1. The observed renoprotection is probably attributable to inhibition of DPP IV activity, mimicking of incretin action, and activation of the GLP-1R.</P>

Rhodium-Catalyzed Highly Regioselective C-H Arylation of Imidazo[1,2-a]pyridines with Aryl Halides and Triflates

Liu, Yi,He, Lin,Yin, Guoqiang,Wu, Guojie,Cui, Yingde Korean Chemical Society 2013 Bulletin of the Korean Chemical Society Vol.34 No.8

A convenient Rh-catalyzed C-H arylation of imidazo[1,2-a]pyridines with a variety of aryl halides or triflates has been reported. This process afforded a range of biaryl compounds in excellent yields and showed high activity and broad scope.

Gene Polymorphism of XRCC1 Arg399Gln and Cervical Carcinoma Susceptibility in Asians: A Meta-analysis Based on 1,759 Cases and 2,497 Controls

Liu, Yi-Ting,Shi, Jing-Pu,Fu, Ling-Yu,Zhou, Bo,Wang, Hai-Long,Wu, Xiao-Mei Asian Pacific Journal of Cancer Prevention 2013 Asian Pacific journal of cancer prevention Vol.14 No.1

Many epidemiological studies in Asian populations have investigated associations between the Arg399Gln gene polymorphism of X-ray repair cross complementing gene 1 (XRCC1) and risk of cervical carcinoma, but no conclusions have been available because of controversial results. Therefore a meta-analysis was conducted for clarification. Relevant studies were identified by searching the Pubmed, Embase, the Web of Science, Cochrane Collaboration's database, Chinese National Knowledge Infrastructure (CNKI), Wanfang database and China Biological Medicinse (CBM) until September, 2012. A total of eight studies were included in the present meta-analysis, which described 1,759 cervical carcinoma cases and 2,497 controls. Odds ratios (ORs) and corresponding 95% confidence intervals (95%CIs) as effect size were calculated by fixed-effect or random-effect models. The overall results indicated that the XRCC1-399G/A polymorphism was marginally associated with cervical carcinoma in Asians: OR (95%CI): 1.16 (1.07, 1.26) in the G/A vs G/G inheritance model, 1.24 (0.87, 1.76)in A/A vs G/G inheritance model, 1.13 (1.01, 1.27) in the dominant inheritance model and 1.18 (0.94, 1.47) in the recessive inheritance model. Subgroup analyses on sample size showed no significant correlation in the small-sample size group but the large-sample size group was consistent with the outcomes of overall meta-analysis. In the subgroup analysis by regions, we only found significant association under the G/A vs G/G inheritance model in the Chinese population. For the non-Chinese populations, no correlation was detected in any genetic inheritance model. In the Asian populations, XRCC1-399G/A gene polymorphism was implied to be associated with cervical carcinoma.