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- 저자 : Karakoc (검색결과 4 건)
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Evaluation of Invasive and Noninvasive Methods for the Diagnosis of Helicobacter Pylori Infection
Cosgun, Yasemin,Yildirim, Abdullah,Yucel, Mihriban,Karakoc, Ayse Esra,Koca, Gokhan,Gonultas, Alpaslan,Gursoy, Gul,Ustun, Huseyin,Korkmaz, Meliha Asian Pacific Journal of Cancer Prevention 2016 Asian Pacific journal of cancer prevention Vol.17 No.12
Objective: The present study was conducted to evaluate invasive and noninvasive diagnostic methods for detection of Helicobacter pylori (H. pylori) in patients admitted with dyspeptic complaints and to compare sensitivities and specificities. Method: Sets of four gastric biopsy specimens were obtained from a total of 126 patients included in the study. The presence of H. pylori was determined by invasive tests including culture, rapid urease test, polymerase chain reaction (PCR) and histopathology. Among noninvasive tests, urea breath test, serological tests and enzyme-linked immunosorbent assay (ELISA) were performed. Results: H. pylori was isolated in 79 (62.7%) gastric biopsy cultures, whereas positivity was concluded for 105 (83.3%) patients by rapid urease test, for 106 (84.1%) by PCR, for 110 (87.3%) by histopathology, for 119 (94.4%) by urea breath test, and for 107 (84.9%) by ELISA. In the present study, the culture findings and histopathological examination findings were accepted as gold standard. According to the gold standard, urea breath test had the highest sensitivity (96.5%) and the lowest specificity (30%), whereas culture and histopathology had the highest specificities (100%). Conclusion: The use of PCR invasively with gastric biopsy samples yielded parallel results with the gold standard. PCR can be recommended for routine use in the diagnosis of H. pylori.
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Emine Anayol,Allah Bakhsh,Omer Cem Karakoc,Selma Onarıcı,Deniz Kom,Muhammad Aasim,Sancar Fatih Ozcan,Surendra Barpete,Saber D. Khabbazi,Burak Onol,Cengiz Sancak,Khalid M. Khawar,Levent Unlu,Sebahattin 한국식물생명공학회 2016 Plant biotechnology reports Vol.10 No.2
Most of the commercialized Bt crops express cry genes under 35S promoter that induces strong gene expression in all plant parts. However, targeted foreign gene expression in plants is esteemed more important as public may be likely to accept ‘less intrusive’ expression of transgene. We developed plant expression constructs harboring cry1Ac gene under control of wound-inducible promoter (AoPR1) to confine Bt gene expression in insect wounding parts of the plants in comparison with cry1Ac gene under the control of 35S promoter. The constructs were used to transform four Turkish cotton cultivars (GSN12, STN-468, Ozbek-100 and Ayhan-107) through Agrobacterium tumefaciens strains GV2260 containing binary vectors p35SAcBAR.101 and AoPR1AcBAR.101 harboring cry1Ac gene under control of 35S and AoPR1, respectively. Phosphinothricin (PPT) was used at concentration of 5 mg L-1 for selection of primary transformants. The primary transformants were analyzed for transgene presence and expression standard molecular techniques. The transformants exhibited appreciable mortality rates against larvae of Spodoptera exigua and S. littoralis. It was found that mechanical wounding of T1 transgenic plants was effective in inducing expression of cry1Ac protein as accumulated levels of cry1Ac protein increased during post-wounding period. We conclude that use of woundinducible promoter to drive insecticidal gene(s) can be regarded as a valuable insect-resistant management strategy since the promoter activity is limited to insect biting sites of plant. There is no Bt toxin accumulation in unwounded plant organs, seed and crop residues, cotton products and by-products, thus minimizing food and environmental concerns.
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Hussein Abdullah Ahmed Ahmed,Selma Onarıcı,Allah Bakhsh,Guray Akdogan,Omer Cem Karakoc,Sancar Fatih Ozcan,Gulsum Aydın,Muhammad Aasım,Levent Unlu,Cengiz Sancak,Samir Naimov,Sebahattin Ozcan 한국식물생명공학회 2017 Plant biotechnology reports Vol.11 No.5
The expression of insecticidal genes must be induced at appropriate time and in sufficient amount to confer protection against targeted pests. However, the increased scientific reports of resistance development in insect pest against insecticidal delta-endotoxins, produced by Bacillus thuringiensis, provide impetus for the development of alternative insect management strategies. The present study was conducted to investigate the importance of targeted expression of a hybrid insecticidal gene (SN19) in potatoes. For this purpose, two plant expression vectors were constructed by cloning hybrid SN19 gene (cry1Badomain I–III and cry1Ia-domain II) under the control of a wound-inducible promoter isolated from Asparagus officinalis (AoPR1) and CaMV 35S promoter, and were transferred to Agrobacterium tumefaciens strain EHA 105. Four potato genotypes (Marabel, Innovator, Tokat 10/1 and Tokat 6/24) were transformed with EHA 105 strain harboring pTF101.1 35S–SN19 and pTF101.1 AoPR1–SN19 constructs. Phosphinothricin (PPT) was used at concentration of 1 mg/l for selection of primary transformants. PCR results showed the presence of both introduced SN19 and bar genes in 43 plants out of total 154 putative transgenics. Expression of SN19 protein in primary transformants was confirmed by Western blot assays. The mechanical wounding of transgenic plants exhibited more accumulated levels of SN19 proteins during post wounding period. Leaf biotoxicity assays with Colorado potato beetle (Coleoptera) and tomato leafminer (Lepidoptera) exhibited 100% mortality of the pests in primary transformants. Based on our mortality results with both constructs, we concluded that the potato transgenic lines exhibited targeted expression of insecticidal gene under the control of AoPR1 promoter upon insect wounding with eliminated toxicity of Cry protein and hence can be further used effectively in potato breeding programme.
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Computational material modeling of masonry walls strengthened with fiber reinforced polymers
Koksal, H. Orhun,Jafarov, Oktay,Doran, Bilge,Aktan, Selen,Karakoc, Cengiz Techno-Press 2013 Structural Engineering and Mechanics, An Int'l Jou Vol.48 No.5
This paper aims to develop a practical approach to modeling of fiber reinforced polymers (FRP) strengthened masonry panels. The main objective is to provide suitable relations for the material characterization of the masonry constituents so that the finite element applications of elasto-plastic theory achieves a close fit to the experimental load-displacement diagrams of the walls subjected to in-plane shear and compression. Two relations proposed for masonry columns confined with FRP are adjusted for the cohesion and the internal friction angle of both units and mortar. Relating the mechanical parameters to the uniaxial compression strength and the hydrostatic pressure acting over the wall surface, the effects of major and intermediate principal stresses ${\sigma}_1$ and ${\sigma}_2$ on the yielding and the shape of the deviatoric section are then reflected into the analyses. Performing nonlinear finite element analyses (NLFEA) for the three walls tested in two different studies, their stress-strain response and failure modes are eventually evaluated through the comparisons with the experimental behavior.
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