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Hong‑Ying Wei,Sheng Huang,Jiang‑Yong Wang,Fang Gao,Jing‑Zhe Jiang 한국유전학회 2018 Genes & Genomics Vol.40 No.3
The emergence and widespread use of high-throughput sequencing technologies have promoted metagenomic studies on environmental or animal samples. Library construction for metagenome sequencing and annotation of the produced sequence reads are important steps in such studies and influence the quality of metagenomic data. In this study, we collected some marine mollusk samples, such as Crassostrea hongkongensis, Chlamys farreri, and Ruditapes philippinarum, from coastal areas in South China. These samples were divided into two batches to compare two library construction methods for shellfish viral metagenome. Our analysis showed that reverse-transcribing RNA into cDNA and then amplifying it simultaneously with DNA by whole genome amplification (WGA) yielded a larger amount of DNA compared to using only WGA or WTA (whole transcriptome amplification). Moreover, higher quality libraries were obtained by agarose gel extraction rather than with AMPure bead size selection. However, the latter can also provide good results if combined with the adjustment of the filter parameters. This, together with its simplicity, makes it a viable alternative. Finally, we compared three annotation tools (BLAST, DIAMOND, and Taxonomer) and two reference databases (NCBI’s NR and Uniprot’s Uniref). Considering the limitations of computing resources and data transfer speed, we propose the use of DIAMOND with Uniref for annotating metagenomic short reads as its running speed can guarantee a good annotation rate. This study may serve as a useful reference for selecting methods for Shellfish viral metagenome library construction and read annotation.
Kang Zhi‐Wei,Liu Fang‐Hua,Xu Yong‐Yu,Cheng Jia‐Hui,Lin Xiao‐Li,Jing Xiang‐Feng,Tian Hong‐Gang,Liu Tong‐Xian 한국곤충학회 2021 Entomological Research Vol.51 No.1
Odorant‐degrading enzymes (ODEs) have been found in insect antennae and play a critical role in signal chemical degradation once the message is conveyed. Significant progress has been made in characterizing ODEs in a variety of pests but very little is known in their natural enemies. We have carried out an antennae‐ and sex‐specific transcriptome of Aphidius gifuensis, a natural enemy of aphid, to identify the candidate ODEs. Based on the antennae‐ and sex‐specific transcriptome, a total of 100 putative ODEs were identified including one aldehyde oxidase (AOX), four alcohol dehydrogenases (ADs), eight UDP‐glucuronosyltransferases (UGTs), 45 cytochrome P450 (P450s), nine glutathione S‐transferases (GSTs) and 40 carboxylesterases (CCEs or CXEs). Additionally, we used RT‐qPCR to determine the expression profiles of these genes in tissues of both sexes. Based on the phylogenic analysis and tissue‐expression patterns, AgifEstE4, AgifCXE3, AgifCCE4, AgifCCE7, and AgifCCE18 were suggested as key ODEs in A. gifuensis. In addition, the female or male specifically enriched genes, such as AgifCCE17, AgifEstB1, AgifCYP18a1, AgifUGT2C2, were also considered to involve in the chemosensory processing in A. gifuensis. This study not only identified the candidate ODEs in A. gifuensis but also provided source for further exploration of the molecular mechanisms of chemical signal transductions in A. gifuensis, as well as other hymenopteran species.
Nidurufin as a New Cell Cycle Inhibitor from Marine-derived Fungus Penicillium flavidorsum SHK1-27
Hong Ren,Wei-wei Liu 대한약학회 2011 Archives of Pharmacal Research Vol.34 No.6
A new cell cycle inhibitor, nidurufin (1), was isolated from the marine-derived fungus Penicillium flavidorsum SHK1-27. An evaluation of antitumor activity indicated that 1 induced in vitro cell cycle arrest at G_2/M transition in the K562 cell line in a concentration and timedependent manner, with an IC_50 value of 12.6 μM.
Wei Hong,Chao Yuan,Fangxi Xie,Yan Su,Jing Chen 한국자동차공학회 2018 International journal of automotive technology Vol.19 No.4
The effects of coolant’s temperature on emissions of particulate matters (PM) and particle-bound polycyclic aromatic hydrocarbons (PAHs) from a gasoline direct injection (GDI) engine were studied during the start process using gasoline (M0) and gasoline mixed with methanol in 15 % volume (M15). The engine worked at a certain idle speed automatically under different coolant’s temperature conditions after successful start. The experimental data was recorded from 0 to 40 seconds during the start. Results indicated that, there are significant differences in PM and particle-bound PAHs emissions between cold and warm start conditions. Particulate size distribution was measured with the Engine Exhaust Particle Sizer (EEPS) 3090. Compared with M0 fuel, the PM emission of M15 fuel decreased significantly, especially nucleation-mode particulate emission. The mass emission of PM was measured using the Gravimetric method. A same variation trend in PM mass emissions can be inferred for both fuels, i.e. it decreases while the coolant’s temperature increases. Compared with M0 fuel, the PM mass with M15 fuel reduces by 80 % at 20 oC coolant’s temperature. Agilent 7000B GC-QQQ was used to provide both qualitative and quantitative analysis on PAHs. The application of M15 fuel reduces the concentrations of most PAH species compared with M0 fuel, except those with smaller aromatic rings. In addition, Benzo(a)pyrene equivalent toxicity (BEQ) is calculated to evaluate the toxicity of PAHs emissions. The toxicity decreases when the GDI engine starts with higher coolant’s temperature or with M15 fuel.
Hong, Wei-Li,Torres, Marta E.,Kim, Ji-Hoon,Choi, Jiyoung,Bahk, Jang-Jun Pergamon Press 2014 Geochimica et cosmochimica acta Vol.140 No.-
<P><B>Abstract</B></P> <P>We present a kinetic model based upon pore water data collected from eight sites drilled during the second Ulleung Basin gas hydrate drilling expedition (UBGH2) in 2010. Three sites were drilled at locations where acoustic chimneys were identified in seismic data, and the rest were drilled on non-chimney (<I>i.e.</I>, background) environments. Our model, coupled a comprehensive compositional and isotopic data set, is used to illustrate the different biogeochemical processes at play in those two environments, in terms of reactions around the sulfate–methane-transition-zone (SMTZ). Organic matter decomposition is an important process for production of methane, dissolved inorganic carbon (DIC) and consumption of sulfate in the non-chimney sites, whereas anaerobic oxidation of methane (AOM) dominates both carbon and sulfur cycles in the chimney environment. Different sources of methane mediate AOM in the two settings. Internally produced methane through CO<SUB>2</SUB> reduction (CR) and methanogenesis fuels AOM in the non-chimney sites, whereas AOM is sustained by methane from external sources in the chimney sites. We also simulate the system evolution from non-chimney to chimney conditions by increasing the bottom methane supply to a non-chimney setting. We show that the higher CH<SUB>4</SUB> flux leads to a higher microbial activity of AOM, and more organic matter decomposition through methanogenesis. A higher methanogenesis rate and a smaller CR contribution relative to AOM in the chimney sites is responsible for the isotopically light DIC and heavy methane in this environment, relative to the non-chimney sites.</P>
A major role for microRNAs in glioblastoma cancer stem-like cells
Hong Wei Yang,Hongyan Xing,Mark D. Johnson 대한약학회 2015 Archives of Pharmacal Research Vol.38 No.3
Studies have demonstrated that miRNAs contributeto the maintenance and phenotype of in several cancertypes. This review will focus on the roles of a few wellstudied miRNAs in cancer stem-like cells of glioblastoma.
Hong Hong Wang,Zhan Peng Qin,Xiang Liang Wan,Ran Wei,Kai Ming Wu,Devesh Misra 대한금속·재료학회 2017 METALS AND MATERIALS International Vol.23 No.5
Simulated heat-affected zone continuous cooling transformation diagram was developed for advanced fireresistantsteel. Over a wide range of cooling rates, corresponding to t8/5 from 6 s to 150 s, granular bainite was thedominant transformation constituent, while the morphology of less dominant martensite-austenite (M-A) constituentchanged from film-like to block-type constituent; but the hardness remained similar to the average value of 190-205 HV (0.2). The start and finish transformation temperature was high at 700 °C and 500 °C, and is different fromthe conventional high strength low alloy steels. It is believed that the high-content (0.09 wt%) of Nb may promotebainite transformation at relatively high temperatures. Martenistic matrix was not observed at high cooling rateand the film-like M-A constituent and blocky M-A constituent with thin film of retained austenite and lath martensitewere observed on slow cooling. Excellent impact toughness was obtained in the heat-affected zone with15-75 kJ/cm welding heat input.
Carboxymethyl Flavonoids and A Monoterpene Glucoside from Selaginella moellendorffii
Hong-Sheng Wang,Ling Sun,Yue-Hu Wang,Ya-Na Shi,Gui-Hua Tang,Fu-Wei Zhao,Hong-Mei Niu,Chun-Lin Long,Ling Li 대한약학회 2011 Archives of Pharmacal Research Vol.34 No.8
A new dihydroflavone, 5-carboxymethyl-7,4'-dihydroxyflavonone (1), and its glucoside 5-carboxymethyl-7,4'-dihydroxyflavonone-7-O-β-D-glucopyranoside (2), and one new monoterpene glucoside, (4Z,6E)-2,7-dimethyl-8-hydroxyocta-4,6-dienoic acid 8-O-β-D-glucopyranoside (3), were isolated from the whole plants of Selaginella moellendorffii. Their structures were determined by spectroscopic methods and chemical transformation. Compound 2 was evaluated for the ability to enhance glucose consumption in normal and insulin-resistant L6 muscle cells induced by high concentrations of insulin and glucose. Glucose consumption in insulin-resistant cells (but not in normal cells) was increased 15.2 ± 3.3% (p < 0.01) by compound 2 at a concentration of 0.1 μM in the presence of insulin (1 nM).
( Wei Hong Wang ),( Tae Gu Lee ),( Ra Hul S. Patil ),( Bara Mun ),( In Ho Yang ),( Hi Young Kim ),( Dong Yup Hahn ),( Dong Hwan Won ),( Ji Hye Lee ),( Ye Hee Lee ),( Hyuk Jae Choi ),( Sang Jip Nam ),( 영남대학교 약품개발연구소 2015 영남대학교 약품개발연구소 연구업적집 Vol.25 No.-
Chemical investigation of a Korean marine sponge, Minanchora sp. led to the isplation of three new steriodes (1-3). Compounds 1 and 2, designated as monan chosterols A abd B, resoectubely, represent the first example of steriods possessing the bicyclo[4.3.1] A/Brubg ststem from a natural source, Compounds 1-3 were investigated for their anti-inflammatory activity by evaluating their inhibitory effects on the mRna expression of 1L-6, TNF-a and COX-2 in the LPS-stimulated murine RAW264.7 macrophage cells, Compounds 2 and 3 exhibited significant inhibitpry effects on the mRNA expression of 1L-6 without notable cytotoxocotu tp tje cells in a dose-dependent manner.