The effects of codon usage on the formation of secondary structures of nucleocapsid protein of peste des petits ruminants virus

Xiao‑xia Ma,Yi‑ning Wang,Xiao‑an Cao,Xue‑rui Li,Yong‑sheng Liu,Jian‑hua Zhou,Xue‑peng Cai 한국유전학회 2018 Genes & Genomics Vol.40 No.9

The nucleocapsid (N) protein of peste des petits ruminants virus (PPRV) with a conserved amino acid usage pattern plays an important role in viral replication. The primary objective of this study was to estimate roles of synonymous codon usages of PPRV N gene and tRNA abundances of host in the formation of secondary structure of N protein. The potential effects of synonymous codon usages of N gene and tRNA abundances of host on shaping different folding units (α-helix, β-strand and the coil) in N protein were estimated, based on the information about the modeling secondary structure of PPRV N protein. The synonymous codon usage bias was found in different folding units in PPRV N protein. To better understand the role of translation speed caused by variant tRNA abundances in shaping the specific folding unit in N protein, we modeled the changing trends of tRNA abundance at the transition boundaries from one folding unit to another folding unit (β-strand → coil, coil → β-strand, α-helix → coil, coil → α-helix). The obvious fluctuations of tRNA abundance were identified at the two transition boundaries (β-strand → coil and coil → β-strand) in PPRV N protein. Our findings suggested that viral synonymous codon usage bias and cellular tRNA abundance variation might have potential effects on the formation of secondary structure of PPRV N protein.

VAULT PROTEIN-TEMPLATED ASSEMBLIES OF NANOPARTICLES

XIAO-YING QI,XIAO HUANG,HAI LI,YUSONG WANG,Yun Xia,MEENUBHARATHI NATARAJAN,JUN WEI,Subbu S. Venkatraman,HUA ZHANG 성균관대학교(자연과학캠퍼스) 성균나노과학기술원 2012 NANO Vol.7 No.1

Recombinant vault nanoparticles are used as stable nanoscale platforms for controlled self-assembly of various kinds of nanoparticles into the predefined multidimensional architectures. High-yield and uniform discoidal assemblies templated by vaults are constructed from gold nanospheres and quantum dots, while dimeric assemblies are formed from relatively-large gold nanocubes. The vault-templated approach appears to be mainly mediated by the surface and dimensional properties of nanoparticles while less affected by the chemical composition of nanoparticles, making it a universal strategy for fabrication of nanoassemblies with designed properties for potential applications.

Metabolomic analysis of biochemical changes in the tissue and urine of proteoglycan-induced spondylitis in mice after treatment with moxibustion

Xiao Xu,Ya-Nan Shi,Rong-Yun Wang,Cai-Yan Ding,Xiao Zhou,Yu-Fei Zhang,Zhi-Ling Sun,Zhi-Qin Sun,Qiu-Hua Sun 한국한의학연구원 2021 Integrative Medicine Research Vol.10 No.1

Background: Moxibustion is widely used in East Asian countries to manage the symptom of rheumatic diseases. The aim of this study was to identify potential metabolic profiles of moxibustion on relieving ankylosing spondylitis (AS) mice through UHPLC-Q-TOF/MS metabolomic study. Methods: Thirty-two female Balb/c mice were randomized into healthy control (HC), AS model, moxibustion at acupuncture points (MA) in AS model, and moxibustion at non-acupuncture points (MNA) AS model groups. Moxibustion was administered daily at GV4, bilateral BL23 and bilateral ST36 acupuncture points for four weeks in the MA group. The overall health status, the thickness of hind paws and the tissue concentrations of IL-1β, PGE2, IL-6 and TNF-α were assessed. The UHPLC-Q-TOF/MS was used to explore the perturbations of endogenous metabolites in tissue and urine of AS model mice intervened by moxibustion. Results: Compared with the AS group, the overall health status was significantly improved after 4-week moxibustion intervention (p < 0.05). The results also showed that MA significantly reduced the levels of paw thickness and decreased the levels of four cytokines in the tissue (p < 0.01). Thirty-seven endogenous metabolites identified by the OPLS-DA were considered to be contributing to therapeutic effects of moxibustion. Moreover, metabolic pathway analysis further revealed that the identified metabolites were mainly involved in TCA cycle, Lipid metabolism, Amino Acid metabolism, Intestinal flora metabolism and Purine metabolism. Conclusions: UHPLC-Q-TOF/MS based metabolomics approach, as a novel and powerful tool, can help us to gain the insights into potential mechanisms of action of moxibustion for AS.

Effect of polymer and additive on the structure and property of porous stainless steel hollow fiber

Xiao-Hua Ma,Zhen-Liang Xu,Yu Bai,Yue Cao 한국화학공학회 2014 Korean Journal of Chemical Engineering Vol.31 No.8

Porous stainless steel hollow fiber has been widely used due to its high mechanical strength, excellentthermal conductivity and good sealing properties compared with other porous supports. We successfully prepared porousstainless steel hollow fibers using polyacrylonitrile (PAN) as polymer via dry-wet spinning followed by sintering throughtemperature programming method. The PAN concentration had an obvious impact on the structure and property ofporous stainless steel hollow fiber even if it would be burned off during sintering. The results showed that the morphologycould be tuned by adjusting the concentration of PAN. With increasing PAN concentration in casting solutionfor spinning, the viscosity was increased dramatically, resulting in much compact structures with high pure water flux(higher than 3×105 L·m−2·h−1·Pa−1). A more dense structure could be obtained by adding additive polyvinylpyrrolidone(PVP) as viscosity enhancer.

The Role of Peripheral Cannabinoid Receptors Type 1 in Rats with Visceral Hypersensitivity Induced by Chronic Restraint Stress

( Xiao Jun Yang ),( Xiao Hua Hou ),( Wei Qian ),( Lei Shen ) 대한소화관운동학회 2010 Journal of Neurogastroenterology and Motility (JNM Vol.16 No.3

Identification and evolutionary history of the DD41D transposons in insects

Xiao-Gu Zhang,Hua-Hao Zhang,Yi-Hong Shen,Xiao-Min Xiong,Min-Jin Han 한국유전학회 2016 Genes & Genomics Vol.38 No.2

The rosa monophyletic group of transposons is a group of transposable element with characteristics of encoding a DD41D motif in the catalytic domain. However, biology and evolutionary history of this monophyletic group are still poorly understood. In this study, we report the first description for the presence of a rosa transposon in the silkworm Bombyx mori. Further analyses confirmed that this element in the silkworm genome had recently amplified and might still be capable of transposition. In addition, we present evidence, based on searches of publicly available insect genomes, that a new clade of the rosa monophyletic group was identified. Interestingly, analysis of their three dimensional structures suggested that these proteins showed highly similar protein structures with that of the Mos1 transposase. These results provided useful insights into the functionality of these transposases and their structural and functional deviations from other transposases in the Tc1/mariner superfamily. Meanwhile, sequence and phylogenetic analysis confirmed that DD41D and maT elements might represent another independent large group of the Tc1/mariner superfamily. Importantly, the result of the comparison of terminal inverted repeats (TIRs) validated that DD41D and maT elements almost had identical consensus terminal sequences (50-CAGGGTGNS NCA-30), implying they might have similar cleavage sites or patterns during the process of their transposition. In a word, this study will enrich and expand our knowledge of the Tc1/mariner superfamily.

Oxidation behavior of C/C composites with B4C-SiCZrC-ZrB2 coating prepared by infiltration and pyrolysis

Xiao-Hua Zuo,Zhi-Jun Dong,Guan-Ming Yuan,Zheng-Wei Cui,Xuan-Ke Li 한양대학교 세라믹연구소 2021 Journal of Ceramic Processing Research Vol.22 No.1

Polycarbosilane, B-Si and B-Si-Zr modification coal tar pitch were used as impregnate agent for infiltration and pyrolysis formation of carbon/carbon (abbreviated as C/C) composites with B4C-SiC-ZrC-ZrB2 coating. The density of the composites was examined to be 1.0 g·cm-3, 1.4 g·cm-3 and 1.8 g·cm-3, respectively. The phase compositions, surface morphologies and element distributions of the coating were analyzed by X-ray diffraction (XRD) scanning electron microscopy (SEM) and energy dispervive spectroscopy (EDS), respectively. The result showed that the two composites with a density of 1.4 g·cm-3 and 1.8 g·cm-3 displayed compact microstructures. The oxidation behavior of the composites was studied by oxidation in air at temperatures from 800 to 1,550 ℃ for 1 h. The composites with a density of 1.8 g·cm-3 exhibited a lower weight loss of 1.8 % after oxidation. B4C-SiC-ZrC-ZrB2 coating was found to provide the best protection by the precipitated B2O3, SiO2 and ZrO2 on the surface of the composites during the oxidation process, which were characterized by self-healing and antioxidation. The C/C composites with B4C-SiC-ZrC-ZrB2 coating performed well at high temperatures with the formation of complex oxides glass film that prevented oxygen from further spreading into the matrix.

Structural and Optical Properties of RF Magnetron Reactively Sputtered Ag2O Film

Xiao-Yong Gao,Jiao-Min Ma,Chao Chen,Meng-Ke Zhao,Jin-Hua Gu,Jing-Xiao Lu 한국물리학회 2012 THE JOURNAL OF THE KOREAN PHYSICAL SOCIETY Vol.60 No.5

A series of <111> oriented Ag2O films was deposited onto glass substrates by using RF magnetron reactive sputtering at different flow ratios (FRs) of oxygen to argon. The Ag2O film deposited at FR = 0.667 was the best <111> oriented film due to dual contributions from both lattice strain and film stress. The films’ transmissivity of over 70% in the near-infrared region indicated that Ag2O films are not suitable for applications as transparent conductive films in the visible region. Ag2O films deposited at FRs from 0.467 to 0.800 had optical band gaps ranging from 3.266 eV to 3.107 eV. The redshift in the films’ absorption edge may be attributed to the decrease in the lattice strain with increasing in FR. A series of <111> oriented Ag2O films was deposited onto glass substrates by using RF magnetron reactive sputtering at different flow ratios (FRs) of oxygen to argon. The Ag2O film deposited at FR = 0.667 was the best <111> oriented film due to dual contributions from both lattice strain and film stress. The films’ transmissivity of over 70% in the near-infrared region indicated that Ag2O films are not suitable for applications as transparent conductive films in the visible region. Ag2O films deposited at FRs from 0.467 to 0.800 had optical band gaps ranging from 3.266 eV to 3.107 eV. The redshift in the films’ absorption edge may be attributed to the decrease in the lattice strain with increasing in FR.

Research Status on College Students Participation in Sports Tourism

( Xiao Hua Liu ) 한국체육학회 2015 국제스포츠과학 학술대회 Vol.2015 No.1

Introduction: This article give all aspects analysis on present situation of sports tourism to Beijing college students, finally it proposes the constructive opinion, by supplied the model and the reference. Methods: This article employs many kinds of method such as literature research, the expert interview, the questionnaire survey, the mathematical statistic and the logical analytic method. Results: The weakness of sports tourism to college students: 61.1% college students in survey thought that attend sports tourism will cause additional expenses and they do not choose it for these reasons. Other 65.4% girls feel dull In the process of sports tourism. The strengths of sports tourism to college students: through conducting the survey, it can be find that improve body health is the first motive to college students attend sports tourism, enhance social adaptation is secondary. The third aspects, security of participate in the sports tourism is the strength to students. The opportunities of sports tourism to college students: < outline of the nationwide body-building plan > point that citizens health services will be developing and to form of fitness and leisure market. The encouragement policies give a rare opportunity to sports tourism. Meanwhile, the new shopping forms provide help to clear the obstacles to development. The threats of sports tourism to college students: Resources explore in sports tourism is disorderly and other industries constitutes a threat to development of sports tourism. Conclusion: Improve body health and mental health is most important function of sports tourism, it cater the purpose of fitness and entertainment to college students attend sports tourism. In circumstances of foster Sports tourism, practitioners should take new channels for product promotion such as internet mass order etc. Thus reduce economic cost of the students in these ways. Rich tour content, resource development reasonably, maintain its fashion and novelty, make sports tourism competitive and vitality, can help sports tourism popular in campus.

Clinical Study on Fluvoxamine Combined with Oxycodone Prolonged-Release Tablets in Treating Patients with Moderate to Severe Cancer Pain

Xiao, Yang,Liu, Jun,Huang, Xin-En,Ca, Li-Hua,Ma, Yi-Min,Wei, Wei,Zhang, Rong-Xia,Huang, Xiao-Hong,Chang, Juan,Wu, Yi-Jia Asian Pacific Journal of Cancer Prevention 2014 Asian Pacific journal of cancer prevention Vol.15 No.23

Objective: To observe treatment effects and safety of fluvoxamine combined with oxycodone prolonged-release tablets in treating patients with moderate to severe cancer pain. Methods: Patients confirmed pathologically with cancer and complicated with moderate to severe pain, were divided into control and experimental groups. Oxycodone prolonged-release tablets, with or without fluvoxamine, were administrated to all study patients until pain relief. Degree of pain relief, dose of oxycodone prolonged-release tablets, side effects and quality of life were compared before and after treatment. Results: In total, 120 patients were recruited. No statistically significant difference was detected regarding age, gender, types of cancer, KPS between two groups of patients (P>0.05). Baseline pain score of patients with moderate pain in treatment and control group was $4.9{\pm}0.8$ and $5.1{\pm}0.8$, respectively; and decreased to $1.8{\pm}1.1$ and $1.2{\pm}1.1$ after treatment, respectively. Pain intensity was significantly reduced in the treatment group (P=0.028). Average daily consumption of oxycodone prolonged-release tablets was ($54.0{\pm}19.6$) mg and ($44.7{\pm}18.7$) mg respectively, which is lower in treatment grpup than in control group, but the difference was not statistically significant (P=0.065). Baseline pain score of patients with severe pain in treatment and control groups were $8.3{\pm}1.1$ and $8.3{\pm}1.1$, respectively; and pain intensity after treatment decreased to $2.9{\pm}1.0$ and $2.3{\pm}1.0$. Pain intensity was significantly reduced in the treatment group, with statistical significance (P=0.026). Average daily consumption of oxycodone prolonged-release tablets was ($132.0{\pm}42.2$) mg and ($110.7{\pm}33.9$) mg, respectively, which is lower in treatment group than in control group, and the difference was statistically significant (P=0.035). In terms of quality of life, patients in treatment group had better performance status, daily activity, mood, and sleep than that in control group (P < 0.05). Patients in two groups had similar side effects, eg., constipation, nausea/vomiting, lethargy, dizziness, itchy skin, dysuria, and ataxia. Lower incidence of nausea/vomiting, lethargy, was obtained from patients in treatment than in control group, while significant low constipation was observed in treatment than in control group (35.0% vs 49.2%, P=0.026). Conclusion: Fluvoxamine combined with oxycodone prolonged-release tablets could be more effective in treating patients with cancer pain, and could reduce the dosage of oxycodone prolonged-release tablets and thus be associated with lower side effects, and improved quality of life.