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Differential transcriptional profiles of the swarming honey bee
Kyungmun Kim,Si Hyeock Lee 한국응용곤충학회 2016 한국응용곤충학회 학술대회논문집 Vol.2016 No.04
Honey bee swarming is a naturally occurring phenomenon under the conditions of population increase, climate change and pollen deficit. However, unexpected swarming usually results in loss of bee colony, it poses a considerable trouble in bee keeping. In an attempt to search for molecular markers that can predict the swarming behavior, transcriptional profiling was conducted and compared between the heads of swarming group and the remaining group in the same honey bee colonies. A total of 25,551 transcripts were initially identified and 1,144 differentially expressed genes between the two groups were sorted by FC2 (fold change) cut-off value. Several transcripts, including 6 apidermin (structurally novel cuticular protein)-related, 16 cuticular and 3 odorant binding proteins, showed lower expression levels in the swarming group compared with the remaining group (FC range of –2.17 to –667.48, -2.04 to –54.34 and -2.08 to –21.34 respectively). Pathway analyses are currently in progress to understand the physiological and metabolic differences between swarming and remaining groups of honey bees.
Characterization of the transcriptome of Tropilaelaps mercedesae mite parasitizing the honey bee
Kyungmun Kim,Ju Hyeon Kim,Deok Jea Cha,Si Hyeock Lee 한국응용곤충학회 2015 한국응용곤충학회 학술대회논문집 Vol.2015 No.10
Tropilaelaps mercedesae is an ectoparasite of immature honey bees belonging to the genus Tropilaelaps (Acari: Laelapidae). T. mercedesae has become a major threat to the Western honey bee Apis mellifera in Asia, including Korea, and is expanding its geographical range to northern regions due to global warming. To establish gene resources of T. mercedesae, the whole transcriptome was analyzed by RNA sequencing. An mRNA-focused library was generated from total RNA extracted from the mixed stages using the TruSeq RNA Library Preparation kit and sequenced using the HiSeq 2000 platform. A total of 6.0 Gb reads were obtained with 85% Q30 value. Trimmed sequence data were de novo assembled using the CLC Assembly Cell v 4.2. A total of 64,868 non-duplicate contigs were finally obtained and annotated by the Blast2GO using the NCBI nr database. The most abundant species in the resulting 14,336 Blast hits (22.1%) was Metaseiulus occidentalis, a predatory mite, followed by Ixodes scapularis and Tribolium castaneum, suggesting that the T. mercedesae transcriptome matches well with closely related other arthropod species, including mites and ticks. In order to provide basic information for efficient control and monitoring of potential resistance in T. mercedesae, acaricide target genes were annotated and characterized. One voltage-sensitive sodium channel gene encoding the molecular target of fluvalinate, a pyrethroid acaricide most widely used for the control of T. mercedesae, was identified and its molecular properties were investigated. In addition, other acaricide target genes, including acetylcholinesterase and glutamate (or GABA)-gated chloride channel, were identified and characterized.
Kyungmun Kim,Sang Hyeon Kim,Yun Sang Cho,Si Hyeock Lee 한국응용곤충학회 2018 한국응용곤충학회 학술대회논문집 Vol.2018 No.04
Small hive beetle (Aethina tumida) (SHB) is an invasive species to most northern hemisphere countries, including Korea. In an attempt to obtain basic information for efficient management of SHB, genes encoding conventional insecticide targets [voltage-sensitive sodium channel α-subunit (VSSC) and acetylcholinesterase (AChE)] were annotated and characterized following the analysis of whole transcriptomes of adults and larvae. A single VSSC gene was identified but no apparent mutations associated with pyrethroid resistance were detected. Genes encoding two AChEs (AtAChE1 and AtAChE2) were identified from the SHB transcriptome. AtAChE1 was determined to be the main catalytic enzyme, thereby being a toxicologically more relevant target. No apparent mutations associated with resistance to organophosphorus and carbamate insecticides was identified in the AtAChE1 gene, whereas the S238G mutation, originally identified from the Colorado potato beetle, was detected in the AtAChE2 gene.