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- 저자 : Gachon, Claire (검색결과 4 건)
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Giuseppe C. Zuccarello,Claire M. M. Gachon,Yacine Badis,Pedro Murúa,Andrea Garvetto,Gwang Hoon Kim 한국조류학회I 2024 ALGAE Vol.39 No.1
Oomycetes are ubiquitous heterotrophs of considerable economic and ecological importance. Lately their diversity in marine environments has been shown to be greatly underappreciated and many lineages of intracellular holocarpic parasites, infecting micro- and macro-algae, remain to be fully described taxonomically. Among them, pathogens of marine red algae have been studied extensively as they infect important seaweed crops. Throughout the 20th century, most intracellular, holocarpic biotrophic oomycetes that infect red algae have been assigned to the genus Olpidiopsis Cornu. However, 18S rRNA sequencing of Olpidiopsis saprolegniae, the species considered the generitype for Olpidiopsis, suggests that this genus is not closely related to the marine pathogens and that the latter requires a nomenclatural update. Here, we compile and reanalyze all recently published 18S rRNA sequence data for marine holocarpic oomycetes, with a particular focus on holocarpic pathogens of red algae. Their taxonomy has been revised twice over the past four years, with suggestions to transfer them first into the genus Pontisma and then Sirolpidium, and into a monogeneric order, Pontismatales. We show however, that previously published topologies and the proposed taxa Pontisma, Sirolpidium, and Pontismatales are unsupported. We highlight that name changes that are unfounded and premature create confusion in interested parties, especially concerning pathogens of marine red algae that infect important seaweed crops. We thus propose that the names of these holocarpic biotrophic parasites of red algae are retained temporarily, until a supported topology is produced with more genetic markers to enable the circumscription of species and higher-level taxa.
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Badis, Yacine,Han, Jong Won,Klochkova, Tatyana A.,Gachon, Claire M.M.,Kim, Gwang Hoon The Korean Society of Phycology 2020 ALGAE Vol.35 No.2
Pythium porphyrae is responsible for devastating outbreaks in seaweed farms of Pyropia, the most valuable cultivated seaweed worldwide. While the genus Pythium contains many well studied pathogens, the genome of P. porphyrae has yet to be sequenced. Here we report the first available gene repertoire of P. porphyrae and a preliminary analysis of pathogenicity-related genes. Using ab initio detection strategies, similarity based and manual annotation, we found that the P. porphyrae gene repertoire is similar to classical phytopathogenic Pythium species. This includes the absence of expanded RxLR effector family and the detection of classical pathogenicity-related genes like crinklers, glycoside hydrolases, cellulose-binding elicitor lectin-like proteins and elicitins. We additionally compared this dataset to the proteomes of 8 selected Pythium species. While 34% of the predicted proteome appeared specific to P. porphyrae, we could not attribute specific enzymes to the degradation of red algal biomass. Conversely, we detected several cellulases and a cutinase conserved with plant-pathogenic Pythium species. Together with the recent report of P. porphyrae triggering disease symptoms on several plant species in lab-controlled conditions, our findings add weight to the hypothesis that P. porphyrae is a reformed plant pathogen.
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Novel species of the oomycete Olpidiopsis potentially threaten European red algal cultivation
Badis, Yacine,Klochkova, Tatyana A.,Strittmatter, Martina,Garvetto, Andrea,Murú,a, Pedro,Sanderson, J. Craig,Kim, Gwang Hoon,Gachon, Claire M. M. Springer-Verlag 2019 Journal of applied phycology Vol.31 No.2
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Brodie, Juliet,Chan, Cheong Xin,De Clerck, Olivier,Cock, J. Mark,Coelho, Susana M.,Gachon, Claire,Grossman, Arthur R.,Mock, Thomas,Raven, John A.,Smith, Alison G.,Yoon, Hwan Su,Bhattacharya, Debashish Elsevier 2017 Trends in plant science Vol.22 No.8
<P>Algae are (mostly) photosynthetic eukaryotes that occupy multiple branches of the tree of life, and are vital for planet function and health. In this review, we highlight a transformative period in studies of the evolution and functioning of this extraordinary group of organisms and their potential for novel applications, wrought by high-throughput ‘omic’ and reverse genetic methods. We cover the origin and diversification of algal groups, explore advances in understanding the link between phenotype and genotype, consider algal sex determination, and review progress in understanding the roots of algal multicellularity. Experimental evolution studies to determine how algae evolve in changing environments are highlighted, as is their potential as production platforms for compounds of commercial interest, such as biofuel precursors, nutraceuticals, or therapeutics.</P> <P><B>Trends</B></P> <P>Application of modern ‘omic and genetic methods has significantly advanced our understanding of the origin, evolution, and metabolic potential of unicellular and multicellular algae, as well as their diverse modes of sexual reproduction.</P> <P>The GreenCut proteins, a conserved gene set in the Viridiplantae, are primarily plastid targeted and have key roles in the function and regulation of photosynthesis, including the maintenance of photosynthetic reaction complexes.</P> <P>Lab evolution experiments demonstrate the strong adaptability of microalgae to environmental changes that are associated with climate change, although it is unclear whether these results will hold in natural ecosystems.</P> <P>The development of algae as ‘cell factories’ promises to allow the production of not only endogenous molecules, but also non-native compounds such as high-value pigments, bulk chemicals, or even therapeutic proteins.</P>
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