This study aimed to evaluate the anti-inflammatory activity and industrial applicability of Lactobacillus johnsonii JNU3402 (JNU3402), a strain previously reported to exert body weight–regulating effects, by establishing its functional efficacy and ...
This study aimed to evaluate the anti-inflammatory activity and industrial applicability of Lactobacillus johnsonii JNU3402 (JNU3402), a strain previously reported to exert body weight–regulating effects, by establishing its functional efficacy and large-scale production conditions. To this end, a comprehensive safety assessment based on whole-genome sequencing was conducted, including analyses of antibiotic resistance and hemolytic activity, followed by in vivo evaluation of its anti-inflammatory effects. Gastric and intestinal protective activities were assessed using an HCl/ethanol-induced gastritis model and a dextran sulfate sodium (DSS)–induced colitis model, respectively. In addition, freeze-drying protectant optimization using statistical mixture design was performed to support industrial production. JNU3402 exhibited strong acid tolerance and high adhesion capacity to HT-29 intestinal epithelial cells compared with commercially available probiotic strains. Whole-genome analysis revealed that JNU3402 harbors key functional genes associated with stress tolerance (trxA/B, tpx, groES, dnaK/J), immunomodulation (dltA–D, lspA), and adhesion (comGA/GC/GF). Although the tetracycline resistance gene tet(W) was detected, no transferable resistance elements were identified, and no hemolytic activity was observed, supporting the strain’s safety. In the gastritis model, JNU3402 alleviated gastric epithelial damage by enhancing MUC5AC expression and suppressing pro-inflammatory cytokine production. In the DSS-induced colitis model, JNU3402 significantly reduced disease activity, prevented DSS-induced colon shortening, and attenuated epithelial barrier disruption and mucus layer deterioration. These protective effects were accompanied by increased expression of the tight junction proteins ZO-1 and Claudin-1, indicating reinforcement of intestinal barrier integrity. Furthermore, tissue and serum analyses demonstrated increased IL-10 levels alongside reduced TNF-α and IL-6 levels, suggesting effective attenuation of inflammatory responses and restoration of intestinal mucosal homeostasis. JNU3402 possesses a thioredoxin-based antioxidant system (trxA–trxB–tpx), which may contribute to reactive oxygen species detoxification and modulation of NF-κB signaling, thereby providing a mechanistic basis for the observed mitigation of oxidative epithelial damage under inflammatory and oxidative stress conditions. These molecular characteristics partially explain the strain’s anti-inflammatory and cytoprotective effects. Optimization of freeze-drying protectants was conducted using a statistical mixture design in which the proportions of three components were varied while maintaining a constant total composition, with viable cell count as the response variable. The optimal formulation (MSG 0.01–trehalose 0.01–whey powder 0.98) maximized cell viability and resulted in high post-lyophilization survival. Storage stability evaluation revealed distinct temperature-dependent viability trends: viability decreased most markedly under room-temperature storage, showed a more gradual decline under refrigerated conditions, and remained highly stable under frozen storage. Consistent long-term stability at low temperatures, together with the achievement of high viable counts at pilot-scale fermentation, supports the feasibility of large-scale production of JNU3402. In conclusion, JNU3402 exhibits robust gastrointestinal survivability, mucosal protective activity, immunomodulatory and antioxidant properties, and industrial stability, highlighting its potential as a next-generation probiotic candidate for the prevention and alleviation of mucosal inflammatory disorders, including gastritis and colitis, as well as for industrial application.